Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001264A_C01 KMC001264A_c01
(724 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177297.1| hypothetical protein; protein id: At1g71410.1 [... 74 2e-12
pir||F86362 F19G10.17 protein - Arabidopsis thaliana gi|2462837|... 70 4e-11
ref|NP_173700.1| hypothetical protein; protein id: At1g22870.1 [... 70 4e-11
dbj|BAB39109.1| P0686E09.1 [Oryza sativa (japonica cultivar-group)] 55 8e-07
gb|AAN75219.1| chloroplast protein translocon component Tic40 pr... 38 0.13
>ref|NP_177297.1| hypothetical protein; protein id: At1g71410.1 [Arabidopsis thaliana]
gi|12323737|gb|AAG51833.1|AC016163_22 hypothetical
protein; 58558-63003 [Arabidopsis thaliana]
Length = 909
Score = 73.9 bits (180), Expect = 2e-12
Identities = 42/78 (53%), Positives = 50/78 (63%), Gaps = 1/78 (1%)
Frame = -3
Query: 722 KQSHALPA-SNVSNNNFKSTDIGSIFSSNKNDQIAPKLAPPPSSTVGRGRGRGRGATSTT 546
KQS +P+ ++ S NN K DI SIF S+K + A KLAPPPS +GRGRGRGRG T T
Sbjct: 835 KQSQGMPSFTSGSYNNQKPADISSIFGSSKTEPSAMKLAPPPSIAMGRGRGRGRGGTGT- 893
Query: 545 QRSNTSSRAEQPPLLDLL 492
S + QP LLDLL
Sbjct: 894 --STSKPSGSQPSLLDLL 909
>pir||F86362 F19G10.17 protein - Arabidopsis thaliana gi|2462837|gb|AAB72172.1|
hypothetical protein [Arabidopsis thaliana]
Length = 759
Score = 69.7 bits (169), Expect = 4e-11
Identities = 39/79 (49%), Positives = 50/79 (62%), Gaps = 3/79 (3%)
Frame = -3
Query: 719 QSHALPASNVSN--NNFKSTDIGSIFSSNKNDQIAPKLAPPPSSTVGRGRGRGRGATSTT 546
Q+ +P+ S+ N DI SIFSS++ +Q A KLAPPPS VGRGRGRGR TS +
Sbjct: 681 QNQGMPSFGSSSYGNQKPQADISSIFSSSRTEQSAMKLAPPPSIAVGRGRGRGRSGTSIS 740
Query: 545 Q-RSNTSSRAEQPPLLDLL 492
+ + + EQP LLDLL
Sbjct: 741 KPNGSKQQQTEQPSLLDLL 759
>ref|NP_173700.1| hypothetical protein; protein id: At1g22870.1 [Arabidopsis
thaliana]
Length = 811
Score = 69.7 bits (169), Expect = 4e-11
Identities = 39/79 (49%), Positives = 50/79 (62%), Gaps = 3/79 (3%)
Frame = -3
Query: 719 QSHALPASNVSN--NNFKSTDIGSIFSSNKNDQIAPKLAPPPSSTVGRGRGRGRGATSTT 546
Q+ +P+ S+ N DI SIFSS++ +Q A KLAPPPS VGRGRGRGR TS +
Sbjct: 733 QNQGMPSFGSSSYGNQKPQADISSIFSSSRTEQSAMKLAPPPSIAVGRGRGRGRSGTSIS 792
Query: 545 Q-RSNTSSRAEQPPLLDLL 492
+ + + EQP LLDLL
Sbjct: 793 KPNGSKQQQTEQPSLLDLL 811
>dbj|BAB39109.1| P0686E09.1 [Oryza sativa (japonica cultivar-group)]
Length = 963
Score = 55.5 bits (132), Expect = 8e-07
Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 5/56 (8%)
Frame = -3
Query: 644 SNKNDQIAPKLAPPPSSTVGRGRGRGRGAT-----STTQRSNTSSRAEQPPLLDLL 492
S+ Q P+LAPPPS++VGRGRGR +G + S T SN SS EQPP+LDLL
Sbjct: 910 SSSTTQGPPRLAPPPSASVGRGRGRNQGQSALSRASRTPHSNVSS--EQPPILDLL 963
>gb|AAN75219.1| chloroplast protein translocon component Tic40 precursor [Pisum
sativum]
Length = 436
Score = 38.1 bits (87), Expect = 0.13
Identities = 30/92 (32%), Positives = 41/92 (43%), Gaps = 16/92 (17%)
Frame = -3
Query: 716 SHALPASNVSNNNFKST-------DIGSIFSSNKNDQ----IAPKLAPPPSSTVGR---- 582
SH A++ S+ N KS D SI SSN + ++P+L+PPP STVG
Sbjct: 46 SHVTRAASKSHQNLKSVQGKVNAHDFASISSSNGQETTSVGVSPQLSPPPPSTVGSPLFW 105
Query: 581 -GRGRGRGATSTTQRSNTSSRAEQPPLLDLLG 489
G G G A + S A Q ++G
Sbjct: 106 IGIGVGFSALFSVVASRVKKYAMQQAFKSMMG 137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,925,917
Number of Sequences: 1393205
Number of extensions: 13162891
Number of successful extensions: 40294
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39889
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
