>KMC001262A_C02 KMC001262A_c02
aaaactaattagcatgctcaacaaatgagagtgatggtaacaaaaaaaaaggcaagtAAC
AAAAAAAATACAAATGAGAGTGATACACAACAGAAACTGAAGTTATGTCAGTAATTTCTC
CAAGACATAAAATCTGATCATTTATATGAATATAGTTTAAAATAAAGAAATATCAACTTG
GGCAAAATAAAAAATCAGTTGTGAAACTCTTTCTGTGCAGTGTCCAAGTGATCAAGTGTC
TACTCCATGGCCTCGGCATCATCCATTCTTCTATGCACCACCAGTGTTTAAGCACAGAAG
ATCAACCCACTTTTTTCGCAACCATGATATTCTCTTGCAGCTCATATACATAGGCAGGCA
TGGACCTTACGACAATTGAACAAACAAATAGCATCATCAAAGTGTTTTCCTGCTGCTGCC
GCCTCCATATGGCTTTGATCACTTCTCCAAAAAATTAATACTTCCCTTTTACTTTCCTTT
TTAATTGAATGCAAAAACAAAAGAAAAATAAGAAAGTGATTCTAGGTAAGAATTTATAAT
GTTGGCTCATAAAAGATATATAAGCAGGACAATGGAACAAATTAAACAAACATGTATATA
TGACATAATTT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC001262A_C02 KMC001262A_c02
         (611 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|EAA40606.1| GLP_23_6083_6463 [Giardia lamblia ATCC 50803]           36  0.45
gb|AAO24032.1| envelope glycoprotein [Human immunodeficiency vir...    34  1.3
emb|CAC15221.1| envelope glycoprotein gp120 [Human immunodeficie...    34  1.7
gb|AAC98561.1| gp120 [Human immunodeficiency virus type 1]             33  2.2
emb|CAC24833.1| envelope protein [Human immunodeficiency virus 1]      32  5.0

>gb|EAA40606.1| GLP_23_6083_6463 [Giardia lamblia ATCC 50803]
          Length = 126

 Score = 35.8 bits (81), Expect = 0.45
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 96 FLLCITLICIFFVTCLFFCYHHSHLLSMLIS 4
          F++C+  +C +F+TC+  C + S L+S L S
Sbjct: 2  FVICVVAVCHYFITCMSLCQYASALVSFLYS 32

>gb|AAO24032.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 218

 Score = 34.3 bits (77), Expect = 1.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 167 EISTWAK*KISCETLSVQCPSDQVSTPWPRHHPFFYAPPV 286
           E STW     S ET+++QC   Q+   W R     YAPP+
Sbjct: 123 ENSTWTNSTESNETITLQCRIRQIINMWQRTGQAMYAPPI 162

>emb|CAC15221.1| envelope glycoprotein gp120 [Human immunodeficiency virus 1]
          Length = 193

 Score = 33.9 bits (76), Expect = 1.7
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 161 NKEISTWAK*K-ISCETLSVQCPSDQVSTPWPRHHPFFYAPPV 286
           NKE  TW++   I  +T+++QC   Q+   W R     YAPP+
Sbjct: 122 NKESDTWSRNSTIRNDTITLQCRIKQIINMWQRTGRAMYAPPI 164

>gb|AAC98561.1| gp120 [Human immunodeficiency virus type 1]
          Length = 218

 Score = 33.5 bits (75), Expect = 2.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 173 STWAK*KISCETLSVQCPSDQVSTPWPRHHPFFYAPPV 286
           STW     S ET+++QC   Q+   W R     YAPP+
Sbjct: 125 STWTNSTESNETITLQCRIRQIINMWQRTGQAMYAPPI 162

>emb|CAC24833.1| envelope protein [Human immunodeficiency virus 1]
          Length = 568

 Score = 32.3 bits (72), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (54%), Gaps = 1/43 (2%)
 Frame = +2

Query: 161 NKEISTWAK*KISC-ETLSVQCPSDQVSTPWPRHHPFFYAPPV 286
           NKE  TW++   +  +T+++QC   Q+   W R     YAPP+
Sbjct: 399 NKENDTWSRNSTTRNDTITLQCRIKQIINMWQRTGRAMYAPPI 441

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,768,767
Number of Sequences: 1393205
Number of extensions: 11162765
Number of successful extensions: 32276
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 31005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32229
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 SPD010f07_f BP044813 1 532 2 SPD004a08_f BP044284 67 319 3 MR077b08_f BP081910 78 444 4 MPDL045b05_f AV778761 78 612 5 MR076a09_f BP081818 82 466 6 MR076c06_f BP081835 86 469

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