Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001260A_C01 KMC001260A_c01
(763 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174586.1| unknown protein; protein id: At1g33100.1 [Arabi... 139 4e-32
ref|NP_174585.1| hypothetical protein; protein id: At1g33090.1 [... 139 6e-32
ref|NP_174587.1| unknown protein; protein id: At1g33110.1, suppo... 138 1e-31
gb|AAM62936.1| unknown [Arabidopsis thaliana] 135 6e-31
ref|NP_567640.1| putative protein; protein id: At4g21910.1 [Arab... 135 6e-31
>ref|NP_174586.1| unknown protein; protein id: At1g33100.1 [Arabidopsis thaliana]
Length = 475
Score = 139 bits (350), Expect = 4e-32
Identities = 62/95 (65%), Positives = 77/95 (80%)
Frame = -1
Query: 763 LAVSILLYSVQPVLSGVALGAGWQSTVAYVNLGCYYIIGLPVGIVLGNVFHWQVKGIWIG 584
LA SILL SVQPVLSGVA+GAGWQ VAYVNL CYY++G+P+G++LG V QVKG+WIG
Sbjct: 366 LAFSILLNSVQPVLSGVAIGAGWQGYVAYVNLACYYLVGIPIGVILGYVVGLQVKGVWIG 425
Query: 583 MLFGTLVQTIVLVIITYRTDWEEQVTIARNRVNRW 479
MLFG VQT VL ++T RTDW++QV+ + +NRW
Sbjct: 426 MLFGIFVQTCVLTVMTLRTDWDQQVSTSLRNINRW 460
>ref|NP_174585.1| hypothetical protein; protein id: At1g33090.1 [Arabidopsis
thaliana]
Length = 494
Score = 139 bits (349), Expect = 6e-32
Identities = 64/95 (67%), Positives = 77/95 (80%)
Frame = -1
Query: 763 LAVSILLYSVQPVLSGVALGAGWQSTVAYVNLGCYYIIGLPVGIVLGNVFHWQVKGIWIG 584
LA SILL SVQPVLSGVA+GAGWQ VAY+NL CYY++G+PVG+VLG V QVKG+WIG
Sbjct: 385 LAFSILLNSVQPVLSGVAVGAGWQGYVAYINLACYYLLGIPVGLVLGYVVGLQVKGVWIG 444
Query: 583 MLFGTLVQTIVLVIITYRTDWEEQVTIARNRVNRW 479
MLFG VQT VL I+T RTDW++QV+ + +NRW
Sbjct: 445 MLFGIFVQTCVLTIMTLRTDWDQQVSTSLKNINRW 479
>ref|NP_174587.1| unknown protein; protein id: At1g33110.1, supported by cDNA:
gi_17065359 [Arabidopsis thaliana]
gi|17065360|gb|AAL32834.1| Unknown protein [Arabidopsis
thaliana] gi|21387205|gb|AAM48006.1| unknown protein
[Arabidopsis thaliana]
Length = 494
Score = 138 bits (347), Expect = 1e-31
Identities = 62/95 (65%), Positives = 77/95 (80%)
Frame = -1
Query: 763 LAVSILLYSVQPVLSGVALGAGWQSTVAYVNLGCYYIIGLPVGIVLGNVFHWQVKGIWIG 584
LA SIL+ SVQPVLSGVA+GAGWQ V YVNL CYY++G+P+GI+LG V QVKG+WIG
Sbjct: 385 LAFSILMNSVQPVLSGVAVGAGWQGYVTYVNLACYYLVGIPIGIILGYVVGLQVKGVWIG 444
Query: 583 MLFGTLVQTIVLVIITYRTDWEEQVTIARNRVNRW 479
MLFG VQT VL ++T RTDW++QV+ + R+NRW
Sbjct: 445 MLFGIFVQTCVLTVMTLRTDWDQQVSTSLRRLNRW 479
>gb|AAM62936.1| unknown [Arabidopsis thaliana]
Length = 507
Score = 135 bits (340), Expect = 6e-31
Identities = 59/101 (58%), Positives = 82/101 (80%), Gaps = 1/101 (0%)
Frame = -1
Query: 763 LAVSILLYSVQPVLSGVALGAGWQSTVAYVNLGCYYIIGLPVGIVLGNVFHWQVKGIWIG 584
LA++I+L +QPVLSGVA+G GWQ+ VAYVN+GCYY++G+PVG +LG F +Q KGIW G
Sbjct: 404 LAITIILNGIQPVLSGVAVGCGWQTYVAYVNVGCYYVVGIPVGCILGFTFDFQAKGIWTG 463
Query: 583 MLFGTLVQTIVLVIITYRTDWEEQVTIARNRVNRW-SKVEP 464
M+ GTL+QT++L+ +TYRTDW+++V AR R++ W K EP
Sbjct: 464 MIGGTLMQTLILLYVTYRTDWDKEVEKARKRLDLWDDKKEP 504
>ref|NP_567640.1| putative protein; protein id: At4g21910.1 [Arabidopsis thaliana]
gi|15809935|gb|AAL06895.1| AT4g21910/T8O5_120
[Arabidopsis thaliana] gi|22137012|gb|AAM91351.1|
At4g21910/T8O5_120 [Arabidopsis thaliana]
Length = 507
Score = 135 bits (340), Expect = 6e-31
Identities = 59/101 (58%), Positives = 82/101 (80%), Gaps = 1/101 (0%)
Frame = -1
Query: 763 LAVSILLYSVQPVLSGVALGAGWQSTVAYVNLGCYYIIGLPVGIVLGNVFHWQVKGIWIG 584
LA++I+L +QPVLSGVA+G GWQ+ VAYVN+GCYY++G+PVG +LG F +Q KGIW G
Sbjct: 404 LAITIILNGIQPVLSGVAVGCGWQTYVAYVNVGCYYVVGIPVGCILGFTFDFQAKGIWTG 463
Query: 583 MLFGTLVQTIVLVIITYRTDWEEQVTIARNRVNRW-SKVEP 464
M+ GTL+QT++L+ +TYRTDW+++V AR R++ W K EP
Sbjct: 464 MIGGTLMQTLILLYVTYRTDWDKEVEKARKRLDLWDDKKEP 504
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 660,097,549
Number of Sequences: 1393205
Number of extensions: 14547319
Number of successful extensions: 34092
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 32655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34045
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 36974710344
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
