Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001257A_C01 KMC001257A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172433.1| putative leucyl-tRNA synthetase; protein id: At... 108 5e-23
pir||F96537 hypothetical protein F2J10.2 [imported] - Arabidopsi... 64 1e-09
dbj|BAA92590.1| KIAA1352 protein [Homo sapiens] 43 0.003
ref|NP_064502.8| leucyl-tRNA synthetase [Homo sapiens] gi|780445... 43 0.003
pir||T51874 hypothetical protein DKFZp762P233.1 - human (fragmen... 43 0.003
>ref|NP_172433.1| putative leucyl-tRNA synthetase; protein id: At1g09620.1 [Arabidopsis
thaliana] gi|25292955|pir||H86229 hypothetical protein
[imported] - Arabidopsis thaliana
gi|2160156|gb|AAB60719.1| Strong similarity to S. pombe
leucyl-tRNA synthetase (gb|Z73100). [Arabidopsis
thaliana]
Length = 1084
Score = 108 bits (270), Expect = 5e-23
Identities = 54/81 (66%), Positives = 64/81 (78%)
Frame = -3
Query: 566 FLKFMKDEXIKLGAQALDLRLPFGEMEVLRENLDLIKRQIALEHVEILSVADAGSVAKAG 387
FLKF KDE I +G QAL+LRLPFGE+EVL+ N DLI+RQ+ LE VEI S +D V+ AG
Sbjct: 1002 FLKFKKDEAISIGTQALNLRLPFGEIEVLQSNKDLIRRQLGLEEVEIYSASDPDDVSIAG 1061
Query: 386 SLASLLNQNPPSPGNPTAIFL 324
ASLL QNPPSPG+PTAIF+
Sbjct: 1062 PHASLLTQNPPSPGSPTAIFV 1082
>pir||F96537 hypothetical protein F2J10.2 [imported] - Arabidopsis thaliana
gi|8569090|gb|AAF76435.1|AC015445_2 Contains similarity
to leucyl tRNA synthetase from Homo sapiens gb|D84223.
[Arabidopsis thaliana]
Length = 843
Score = 64.3 bits (155), Expect = 1e-09
Identities = 29/48 (60%), Positives = 39/48 (80%)
Frame = -3
Query: 566 FLKFMKDEXIKLGAQALDLRLPFGEMEVLRENLDLIKRQIALEHVEIL 423
F+KF K E I +G QAL+LRLPFGE+EVL+ N+DLIKRQ+ LE ++ +
Sbjct: 779 FVKFKKKEAISIGIQALNLRLPFGEIEVLKSNMDLIKRQLGLEELKYI 826
>dbj|BAA92590.1| KIAA1352 protein [Homo sapiens]
Length = 1212
Score = 42.7 bits (99), Expect = 0.003
Identities = 24/83 (28%), Positives = 40/83 (47%)
Frame = -3
Query: 566 FLKFMKDEXIKLGAQALDLRLPFGEMEVLRENLDLIKRQIALEHVEILSVADAGSVAKAG 387
F+ +K+ K+G + LDL+L F E VL EN+ + + LEH+E+ ++A +
Sbjct: 1028 FVAMIKENLEKMGPRILDLQLEFDEKAVLMENIVYLTNSLELEHIEVKFASEAEDKIRED 1087
Query: 386 SLASLLNQNPPSPGNPTAIFLIQ 318
PG P +F I+
Sbjct: 1088 C----------CPGKPLNVFRIE 1100
>ref|NP_064502.8| leucyl-tRNA synthetase [Homo sapiens] gi|7804450|dbj|BAA95667.1|
leucyl tRNA synthetase [Homo sapiens]
Length = 1176
Score = 42.7 bits (99), Expect = 0.003
Identities = 24/83 (28%), Positives = 40/83 (47%)
Frame = -3
Query: 566 FLKFMKDEXIKLGAQALDLRLPFGEMEVLRENLDLIKRQIALEHVEILSVADAGSVAKAG 387
F+ +K+ K+G + LDL+L F E VL EN+ + + LEH+E+ ++A +
Sbjct: 992 FVAMIKENLEKMGPRILDLQLEFDEKAVLMENIVYLTNSLELEHIEVKFASEAEDKIRED 1051
Query: 386 SLASLLNQNPPSPGNPTAIFLIQ 318
PG P +F I+
Sbjct: 1052 C----------CPGKPLNVFRIE 1064
>pir||T51874 hypothetical protein DKFZp762P233.1 - human (fragment)
gi|9368844|emb|CAB99091.1| hypothetical protein [Homo
sapiens]
Length = 420
Score = 42.7 bits (99), Expect = 0.003
Identities = 24/83 (28%), Positives = 40/83 (47%)
Frame = -3
Query: 566 FLKFMKDEXIKLGAQALDLRLPFGEMEVLRENLDLIKRQIALEHVEILSVADAGSVAKAG 387
F+ +K+ K+G + LDL+L F E VL EN+ + + LEH+E+ ++A +
Sbjct: 236 FVAMIKENLEKMGPRILDLQLEFDEKAVLMENIVYLTNSLELEHIEVKFASEAEDKIRED 295
Query: 386 SLASLLNQNPPSPGNPTAIFLIQ 318
PG P +F I+
Sbjct: 296 C----------CPGKPLNVFRIE 308
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,989,870
Number of Sequences: 1393205
Number of extensions: 9168294
Number of successful extensions: 23521
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 21504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23359
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
