Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001255A_C01 KMC001255A_c01
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563924.1| putative nuclear matrix constituent protein; al... 47 2e-04
gb|AAG00257.1|AC002130_22 F1N21.5 [Arabidopsis thaliana] 45 8e-04
ref|NP_176892.1| nuclear matrix constituent protein 1, putative;... 45 8e-04
dbj|BAC41822.1| unknown protein [Arabidopsis thaliana] 45 8e-04
pir||T14321 nuclear matrix constituent protein 1 - carrot gi|219... 43 0.003
>ref|NP_563924.1| putative nuclear matrix constituent protein; alternative splicing
isoform supported by protein homology and gene
predictions [Arabidopsis thaliana]
gi|22329530|ref|NP_683302.1| putative nuclear matrix
constituent protein; protein id: At1g13220.2 [Arabidopsis
thaliana] gi|25518674|pir||G86266 hypothetical protein
F3F19.25 - Arabidopsis thaliana
gi|4850405|gb|AAD31075.1|AC007357_24 Similar to gb|D64087
nuclear matrix constituent protein 1 (NMCP1) from Daucus
carota. [Arabidopsis thaliana]
Length = 1128
Score = 47.0 bits (110), Expect = 2e-04
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = -2
Query: 546 TLSEEVNGTADDIVEHGSEYRSESHGGVDEEDDED---YPRPGETSIGKKLWTFFTT 385
T++E+ N D+ + + +E + D++DD D PRPGE SI KKLWTF TT
Sbjct: 1072 TVNEDTNEDGDEEEDEAQDDDNEENQDDDDDDDGDDDGSPRPGEGSIRKKLWTFLTT 1128
>gb|AAG00257.1|AC002130_22 F1N21.5 [Arabidopsis thaliana]
Length = 1166
Score = 45.1 bits (105), Expect = 8e-04
Identities = 25/58 (43%), Positives = 33/58 (56%)
Frame = -2
Query: 558 DTARTLSEEVNGTADDIVEHGSEYRSESHGGVDEEDDEDYPRPGETSIGKKLWTFFTT 385
D + +SE+VN T R++S G E+D+ D PG+ SIGKKLWTF TT
Sbjct: 1121 DESEAMSEDVNKTP---------LRADSDG---EDDESDAEHPGKVSIGKKLWTFLTT 1166
>ref|NP_176892.1| nuclear matrix constituent protein 1, putative; protein id:
At1g67230.1 [Arabidopsis thaliana]
Length = 1132
Score = 45.1 bits (105), Expect = 8e-04
Identities = 25/58 (43%), Positives = 33/58 (56%)
Frame = -2
Query: 558 DTARTLSEEVNGTADDIVEHGSEYRSESHGGVDEEDDEDYPRPGETSIGKKLWTFFTT 385
D + +SE+VN T R++S G E+D+ D PG+ SIGKKLWTF TT
Sbjct: 1087 DESEAMSEDVNKTP---------LRADSDG---EDDESDAEHPGKVSIGKKLWTFLTT 1132
>dbj|BAC41822.1| unknown protein [Arabidopsis thaliana]
Length = 471
Score = 45.1 bits (105), Expect = 8e-04
Identities = 25/58 (43%), Positives = 33/58 (56%)
Frame = -2
Query: 558 DTARTLSEEVNGTADDIVEHGSEYRSESHGGVDEEDDEDYPRPGETSIGKKLWTFFTT 385
D + +SE+VN T R++S G E+D+ D PG+ SIGKKLWTF TT
Sbjct: 426 DESEAMSEDVNKTP---------LRADSDG---EDDESDAEHPGKVSIGKKLWTFLTT 471
>pir||T14321 nuclear matrix constituent protein 1 - carrot
gi|2190187|dbj|BAA20407.1| nuclear matrix constituent
protein 1 (NMCP1) [Daucus carota]
Length = 1119
Score = 43.1 bits (100), Expect = 0.003
Identities = 23/54 (42%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Frame = -2
Query: 543 LSEEVNGTADDIVEHGSEYRSESHGGVDEEDDED-YPRPGETSIGKKLWTFFTT 385
LSEEVNGT + G + + ++ G E++D D PGE S+ KK+W F TT
Sbjct: 1068 LSEEVNGTPEQ--SRGYQNQGDTSGAEGEDEDGDEVEHPGEVSMRKKVWKFLTT 1119
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,287,033
Number of Sequences: 1393205
Number of extensions: 11464813
Number of successful extensions: 47698
Number of sequences better than 10.0: 171
Number of HSP's better than 10.0 without gapping: 39083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44804
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
