Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001254A_C01 KMC001254A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E84431 probable Na+/H+ antiporter [imported] - Arabidopsis ... 35 0.42
ref|NP_178307.2| putative Na+/H+ antiporter; protein id: At2g019... 35 0.42
ref|NP_608551.1| CG4291-PA [Drosophila melanogaster] gi|7296153|... 34 1.2
gb|AAM50185.1| GH17344p [Drosophila melanogaster] 34 1.2
emb|CAD20320.1| putative Na/H antiporter [Cymodocea nodosa] 34 1.2
>pir||E84431 probable Na+/H+ antiporter [imported] - Arabidopsis thaliana
gi|4406781|gb|AAD20091.1| putative Na+/H+ antiporter
[Arabidopsis thaliana]
Length = 1162
Score = 35.4 bits (80), Expect = 0.42
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = -2
Query: 527 REHSDLMSXPEHFYNQKHHKQSSERIGQHSRSLSARALQISIYGTV 390
+EH LMS PE+ Y ++ + I + + SLS RA+Q+SI+G++
Sbjct: 1021 KEHRGLMSWPENIYAKQQ-----QEINKTTLSLSERAMQLSIFGSM 1061
>ref|NP_178307.2| putative Na+/H+ antiporter; protein id: At2g01980.1, supported by
cDNA: gi_17065339 [Arabidopsis thaliana]
gi|8515714|gb|AAF76139.1|AF256224_1 putative Na+/H+
antiporter SOS1 [Arabidopsis thaliana]
gi|17065340|gb|AAL32824.1| putative Na+/H+ antiporter
[Arabidopsis thaliana]
Length = 1146
Score = 35.4 bits (80), Expect = 0.42
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = -2
Query: 527 REHSDLMSXPEHFYNQKHHKQSSERIGQHSRSLSARALQISIYGTV 390
+EH LMS PE+ Y ++ + I + + SLS RA+Q+SI+G++
Sbjct: 1005 KEHRGLMSWPENIYAKQQ-----QEINKTTLSLSERAMQLSIFGSM 1045
>ref|NP_608551.1| CG4291-PA [Drosophila melanogaster] gi|7296153|gb|AAF51446.1|
CG4291-PA [Drosophila melanogaster]
Length = 338
Score = 33.9 bits (76), Expect = 1.2
Identities = 25/90 (27%), Positives = 37/90 (40%)
Frame = -2
Query: 530 AREHSDLMSXPEHFYNQKHHKQSSERIGQHSRSLSARALQISIYGTVDIPGPSRSLSMDL 351
AR + + M N K KQ ER A +I + TV++ P + + L
Sbjct: 218 ARVNREKMKAFRRTDNPKEKKQKEERRQTFKTEEEAATKEIGQWQTVEVKAPEQPIDWQL 277
Query: 350 ARPQPPRSFPYQDQPFVSAKSGEDHEVKEF 261
P++ Y P VSA S + VK+F
Sbjct: 278 -----PKTDYYSAAPVVSASSEPEPPVKKF 302
>gb|AAM50185.1| GH17344p [Drosophila melanogaster]
Length = 301
Score = 33.9 bits (76), Expect = 1.2
Identities = 25/90 (27%), Positives = 37/90 (40%)
Frame = -2
Query: 530 AREHSDLMSXPEHFYNQKHHKQSSERIGQHSRSLSARALQISIYGTVDIPGPSRSLSMDL 351
AR + + M N K KQ ER A +I + TV++ P + + L
Sbjct: 181 ARVNREKMKAFRRTDNPKEKKQKEERRQTFKTEEEAATKEIGQWQTVEVKAPEQPIDWQL 240
Query: 350 ARPQPPRSFPYQDQPFVSAKSGEDHEVKEF 261
P++ Y P VSA S + VK+F
Sbjct: 241 -----PKTDYYSAAPVVSASSEPEPPVKKF 265
>emb|CAD20320.1| putative Na/H antiporter [Cymodocea nodosa]
Length = 1145
Score = 33.9 bits (76), Expect = 1.2
Identities = 15/46 (32%), Positives = 29/46 (62%)
Frame = -2
Query: 527 REHSDLMSXPEHFYNQKHHKQSSERIGQHSRSLSARALQISIYGTV 390
+EH LMS PE+ + H Q + H+ ++S RA++++I+G++
Sbjct: 1002 QEHGGLMSWPENLQRARSH-QILKDSDHHANNMSTRAMELNIFGSM 1046
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,398,356
Number of Sequences: 1393205
Number of extensions: 9140703
Number of successful extensions: 22668
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 21909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22645
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
