Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001252A_C01 KMC001252A_c01
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S70586 proline-rich protein, 14K - kidney bean gi|1420885|g... 149 2e-35
ref|NP_566036.1| expressed protein; protein id: At2g45180.1, sup... 147 8e-35
pir||S53012 root-specific protein RCc3 - rice gi|786132|gb|AAA65... 138 3e-32
emb|CAA59472.1| hybrid proline-rich protein [Catharanthus roseus] 137 5e-32
pir||S38378 hypothetical protein - Madagascar periwinkle gi|4074... 136 1e-31
>pir||S70586 proline-rich protein, 14K - kidney bean gi|1420885|gb|AAC49369.1|
proline-rich 14 kDa protein
Length = 127
Score = 149 bits (375), Expect = 2e-35
Identities = 66/84 (78%), Positives = 76/84 (89%)
Frame = -1
Query: 488 SCPRDTIKLGVCADVLGLINVQLGKPPKTPCCSLLEGLVDLEAAVCLCTALKANVLGINL 309
SCP +T+K GVCADVLGLI V+LGKPPKTPCC+L++GL DLEAAVCLCTAL+ANVLGINL
Sbjct: 44 SCPENTLKFGVCADVLGLIGVELGKPPKTPCCNLIQGLADLEAAVCLCTALRANVLGINL 103
Query: 308 NLPIXLSLILNYCGKGVPKGFVCY 237
N+PI L+L+LNYCGK PK FVCY
Sbjct: 104 NVPIKLNLLLNYCGKKTPKDFVCY 127
>ref|NP_566036.1| expressed protein; protein id: At2g45180.1, supported by cDNA:
17187., supported by cDNA: gi_15983387 [Arabidopsis
thaliana] gi|25307718|pir||D84887 probable proline-rich
protein [imported] - Arabidopsis thaliana
gi|2583134|gb|AAB82643.1| expressed protein [Arabidopsis
thaliana] gi|15983388|gb|AAL11562.1|AF424568_1
At2g45180/T14P1.1 [Arabidopsis thaliana]
gi|21553826|gb|AAM62919.1| unknown [Arabidopsis
thaliana]
Length = 134
Score = 147 bits (370), Expect = 8e-35
Identities = 65/85 (76%), Positives = 77/85 (90%)
Frame = -1
Query: 494 QPSCPRDTIKLGVCADVLGLINVQLGKPPKTPCCSLLEGLVDLEAAVCLCTALKANVLGI 315
+P+CP DT+KLGVCAD+LGL+NV +G PPKTPCC+LL+GL +LEAAVCLCTALKANVLGI
Sbjct: 49 KPTCPTDTLKLGVCADLLGLVNVVVGSPPKTPCCTLLQGLANLEAAVCLCTALKANVLGI 108
Query: 314 NLNLPIXLSLILNYCGKGVPKGFVC 240
NLN+PI L+L+LNYCGK VP GF C
Sbjct: 109 NLNVPIDLTLLLNYCGKKVPHGFQC 133
>pir||S53012 root-specific protein RCc3 - rice gi|786132|gb|AAA65513.1| RCc3
Length = 133
Score = 138 bits (348), Expect = 3e-32
Identities = 63/82 (76%), Positives = 70/82 (84%)
Frame = -1
Query: 485 CPRDTIKLGVCADVLGLINVQLGKPPKTPCCSLLEGLVDLEAAVCLCTALKANVLGINLN 306
CPRD +KLGVCA+VLGLI ++G PP PCC LLEGLVDLEAAVCLCTA++ N+LGINLN
Sbjct: 52 CPRDALKLGVCANVLGLIKAKVGVPPAEPCCPLLEGLVDLEAAVCLCTAIRGNILGINLN 111
Query: 305 LPIXLSLILNYCGKGVPKGFVC 240
LPI LSLILNYCGK VP GF C
Sbjct: 112 LPIDLSLILNYCGKTVPTGFKC 133
>emb|CAA59472.1| hybrid proline-rich protein [Catharanthus roseus]
Length = 138
Score = 137 bits (346), Expect = 5e-32
Identities = 62/84 (73%), Positives = 74/84 (87%), Gaps = 1/84 (1%)
Frame = -1
Query: 488 SCPRDTIKLGVCADVLG-LINVQLGKPPKTPCCSLLEGLVDLEAAVCLCTALKANVLGIN 312
+CPRD +KLGVCAD+LG LI+ +G PPKTPCCSL+EGL DLEAAVCLCTA+KANVLGIN
Sbjct: 54 TCPRDALKLGVCADLLGGLISAVIGAPPKTPCCSLIEGLADLEAAVCLCTAIKANVLGIN 113
Query: 311 LNLPIXLSLILNYCGKGVPKGFVC 240
LN+P+ LSL+LN C K VP+GF+C
Sbjct: 114 LNVPVSLSLLLNVCSKKVPEGFIC 137
>pir||S38378 hypothetical protein - Madagascar periwinkle
gi|407410|emb|CAA81526.1| 14 kDa polypeptide
[Catharanthus roseus]
Length = 138
Score = 136 bits (343), Expect = 1e-31
Identities = 61/84 (72%), Positives = 74/84 (87%), Gaps = 1/84 (1%)
Frame = -1
Query: 488 SCPRDTIKLGVCADVLG-LINVQLGKPPKTPCCSLLEGLVDLEAAVCLCTALKANVLGIN 312
+CPRD +KLGVCAD+LG LI+ +G PPKTPCCSL+EGL DLEAAVCLCTA+KANVLGIN
Sbjct: 54 TCPRDALKLGVCADLLGGLISAVIGAPPKTPCCSLIEGLADLEAAVCLCTAIKANVLGIN 113
Query: 311 LNLPIXLSLILNYCGKGVPKGFVC 240
LN+P+ L+L+LN C K VP+GF+C
Sbjct: 114 LNVPVSLTLLLNVCSKKVPEGFIC 137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,694,879
Number of Sequences: 1393205
Number of extensions: 8671106
Number of successful extensions: 20342
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 19484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20215
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
