Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001251A_C01 KMC001251A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195518.1| putative protein; protein id: At4g38050.1 [Arab... 117 8e-26
gb|AAM67365.1| unknown [Arabidopsis thaliana] 117 8e-26
dbj|BAC43175.1| unknown protein [Arabidopsis thaliana] gi|289510... 117 8e-26
ref|NP_180349.2| putative membrane transporter; protein id: At2g... 91 1e-17
dbj|BAB63705.1| putative permease 1 [Oryza sativa (japonica cult... 89 4e-17
>ref|NP_195518.1| putative protein; protein id: At4g38050.1 [Arabidopsis thaliana]
gi|7485847|pir||T05632 hypothetical protein F20D10.170 -
Arabidopsis thaliana gi|4467111|emb|CAB37545.1| putative
protein [Arabidopsis thaliana]
gi|7270788|emb|CAB80470.1| putative protein [Arabidopsis
thaliana]
Length = 703
Score = 117 bits (293), Expect = 8e-26
Identities = 53/79 (67%), Positives = 68/79 (85%)
Frame = -3
Query: 511 PSYLIPYAAASSGPSHSGIKPLDFAINALLSMNMVVTLLVAFLLDNTVPGSQEERGVYTW 332
PSY IP+ AASSGP +GI+ LDFA+NA+LS+NMVVT L+AF+LDNTVPGS+EERGVY W
Sbjct: 613 PSYYIPFGAASSGPFQTGIEQLDFAMNAVLSLNMVVTFLLAFILDNTVPGSKEERGVYVW 672
Query: 331 SKAEDITADPSLPSEYSLP 275
++AED+ DP + ++YSLP
Sbjct: 673 TRAEDMQMDPEMRADYSLP 691
>gb|AAM67365.1| unknown [Arabidopsis thaliana]
Length = 148
Score = 117 bits (293), Expect = 8e-26
Identities = 53/79 (67%), Positives = 68/79 (85%)
Frame = -3
Query: 511 PSYLIPYAAASSGPSHSGIKPLDFAINALLSMNMVVTLLVAFLLDNTVPGSQEERGVYTW 332
PSY IP+ AASSGP +GI+ LDFA+NA+LS+NMVVT L+AF+LDNTVPGS+EERGVY W
Sbjct: 58 PSYYIPFGAASSGPFQTGIEQLDFAMNAVLSLNMVVTFLLAFILDNTVPGSKEERGVYVW 117
Query: 331 SKAEDITADPSLPSEYSLP 275
++AED+ DP + ++YSLP
Sbjct: 118 TRAEDMQMDPEMRADYSLP 136
>dbj|BAC43175.1| unknown protein [Arabidopsis thaliana] gi|28951001|gb|AAO63424.1|
At4g38050 [Arabidopsis thaliana]
Length = 429
Score = 117 bits (293), Expect = 8e-26
Identities = 53/79 (67%), Positives = 68/79 (85%)
Frame = -3
Query: 511 PSYLIPYAAASSGPSHSGIKPLDFAINALLSMNMVVTLLVAFLLDNTVPGSQEERGVYTW 332
PSY IP+ AASSGP +GI+ LDFA+NA+LS+NMVVT L+AF+LDNTVPGS+EERGVY W
Sbjct: 339 PSYYIPFGAASSGPFQTGIEQLDFAMNAVLSLNMVVTFLLAFILDNTVPGSKEERGVYVW 398
Query: 331 SKAEDITADPSLPSEYSLP 275
++AED+ DP + ++YSLP
Sbjct: 399 TRAEDMQMDPEMRADYSLP 417
>ref|NP_180349.2| putative membrane transporter; protein id: At2g27810.1, supported
by cDNA: gi_20466158 [Arabidopsis thaliana]
gi|20466159|gb|AAM20397.1| putative membrane transporter
[Arabidopsis thaliana] gi|25083906|gb|AAN72132.1|
putative membrane transporter [Arabidopsis thaliana]
Length = 709
Score = 90.5 bits (223), Expect = 1e-17
Identities = 40/79 (50%), Positives = 56/79 (70%)
Frame = -3
Query: 511 PSYLIPYAAASSGPSHSGIKPLDFAINALLSMNMVVTLLVAFLLDNTVPGSQEERGVYTW 332
PSY PY +S GP S K +++ +N LLSM+MV+ ++A +LDNTVPGS++ERGVY W
Sbjct: 616 PSYYQPYIVSSHGPFKSQYKGMNYVMNTLLSMSMVIAFIMAVILDNTVPGSKQERGVYVW 675
Query: 331 SKAEDITADPSLPSEYSLP 275
S +E T +P+L +Y LP
Sbjct: 676 SDSETATREPALAKDYELP 694
>dbj|BAB63705.1| putative permease 1 [Oryza sativa (japonica cultivar-group)]
Length = 680
Score = 88.6 bits (218), Expect = 4e-17
Identities = 38/79 (48%), Positives = 55/79 (69%)
Frame = -3
Query: 511 PSYLIPYAAASSGPSHSGIKPLDFAINALLSMNMVVTLLVAFLLDNTVPGSQEERGVYTW 332
P+Y PY AS GP H+G +++ +N LLS+NMV+ LVA +LDNTVPG ++ERG+Y W
Sbjct: 587 PTYFQPYIVASHGPIHTGSSGVNYILNTLLSLNMVIAFLVALILDNTVPGGRQERGLYVW 646
Query: 331 SKAEDITADPSLPSEYSLP 275
S+AE + ++ +Y LP
Sbjct: 647 SEAEAARRESAVMKDYELP 665
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,521,870
Number of Sequences: 1393205
Number of extensions: 10027755
Number of successful extensions: 28340
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 27278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28261
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
