Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001250A_C01 KMC001250A_c01
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193348.1| galactokinase like protein; protein id: At4g161... 194 5e-49
emb|CAA74753.1| putative arabinose kinase [Arabidopsis thaliana] 194 5e-49
ref|NP_189871.1| arabinose kinase - like protein; protein id: At... 182 2e-45
ref|NP_691146.1| mevalonate kinase [Oceanobacillus iheyensis HTE... 42 0.005
ref|NP_344908.1| mevalonate kinase [Streptococcus pneumoniae TIG... 33 2.1
>ref|NP_193348.1| galactokinase like protein; protein id: At4g16130.1 [Arabidopsis
thaliana] gi|7485156|pir||F71427 hypothetical protein -
Arabidopsis thaliana gi|2244971|emb|CAB10392.1|
galactokinase like protein [Arabidopsis thaliana]
gi|7268362|emb|CAB78655.1| galactokinase like protein
[Arabidopsis thaliana]
Length = 1039
Score = 194 bits (494), Expect = 5e-49
Identities = 94/114 (82%), Positives = 103/114 (89%)
Frame = -3
Query: 592 DQLTVLGGLLYQCHYSYSACGLGSDGTDRLVHLVQELQHSATSKSEGGTLYGAKITGGGS 413
+QLT LGGLLYQCHYSYSACGLGSDGT+RLV LVQ +QH+ S SE GTLYGAKITGGGS
Sbjct: 924 EQLTALGGLLYQCHYSYSACGLGSDGTNRLVQLVQGMQHNK-SNSEDGTLYGAKITGGGS 982
Query: 412 GGTVCVIGRNCLKSSEQIFEIQQRYKKATGYLPFIFEGSSPGAGKFGYLKLRRR 251
GGTVCV+GRN L+SS+QI EIQQRYK ATGYLP IFEGSSPGAGKFGYL++RRR
Sbjct: 983 GGTVCVVGRNSLRSSQQILEIQQRYKAATGYLPLIFEGSSPGAGKFGYLRIRRR 1036
>emb|CAA74753.1| putative arabinose kinase [Arabidopsis thaliana]
Length = 989
Score = 194 bits (494), Expect = 5e-49
Identities = 94/114 (82%), Positives = 103/114 (89%)
Frame = -3
Query: 592 DQLTVLGGLLYQCHYSYSACGLGSDGTDRLVHLVQELQHSATSKSEGGTLYGAKITGGGS 413
+QLT LGGLLYQCHYSYSACGLGSDGT+RLV LVQ +QH+ S SE GTLYGAKITGGGS
Sbjct: 874 EQLTALGGLLYQCHYSYSACGLGSDGTNRLVQLVQGMQHNK-SNSEDGTLYGAKITGGGS 932
Query: 412 GGTVCVIGRNCLKSSEQIFEIQQRYKKATGYLPFIFEGSSPGAGKFGYLKLRRR 251
GGTVCV+GRN L+SS+QI EIQQRYK ATGYLP IFEGSSPGAGKFGYL++RRR
Sbjct: 933 GGTVCVVGRNSLRSSQQILEIQQRYKAATGYLPLIFEGSSPGAGKFGYLRIRRR 986
>ref|NP_189871.1| arabinose kinase - like protein; protein id: At3g42850.1 [Arabidopsis
thaliana] gi|11357174|pir||T47343 arabinose kinase-like
protein - Arabidopsis thaliana gi|7529256|emb|CAB86672.1|
arabinose kinase-like protein [Arabidopsis thaliana]
Length = 964
Score = 182 bits (463), Expect = 2e-45
Identities = 83/117 (70%), Positives = 105/117 (88%)
Frame = -3
Query: 592 DQLTVLGGLLYQCHYSYSACGLGSDGTDRLVHLVQELQHSATSKSEGGTLYGAKITGGGS 413
+Q+ LG L+YQCH SYSACG+GSDGTDRLV LVQ +++ +SK+E GTLYGAKITGGGS
Sbjct: 848 EQVIGLGELMYQCHDSYSACGIGSDGTDRLVRLVQNMENLKSSKTENGTLYGAKITGGGS 907
Query: 412 GGTVCVIGRNCLKSSEQIFEIQQRYKKATGYLPFIFEGSSPGAGKFGYLKLRRRAAT 242
GGTVCVIG++ L+SSEQI +IQQ+YK+ATG++P++FEGSSPGAGKFGYLK+R+ +AT
Sbjct: 908 GGTVCVIGKSSLRSSEQILQIQQKYKEATGFMPYVFEGSSPGAGKFGYLKIRKNSAT 964
>ref|NP_691146.1| mevalonate kinase [Oceanobacillus iheyensis HTE831]
gi|22775903|dbj|BAC12181.1| mevalonate kinase
[Oceanobacillus iheyensis]
Length = 322
Score = 42.4 bits (98), Expect = 0.005
Identities = 29/95 (30%), Positives = 46/95 (47%)
Frame = -3
Query: 577 LGGLLYQCHYSYSACGLGSDGTDRLVHLVQELQHSATSKSEGGTLYGAKITGGGSGGTVC 398
LG LL + A G+ G ++L+HL +E EG GAK+TGGG+GG +
Sbjct: 239 LGQLLNEAQKELEALGVSDAGLNKLIHLARE---------EGAL--GAKLTGGGNGGCII 287
Query: 397 VIGRNCLKSSEQIFEIQQRYKKATGYLPFIFEGSS 293
+ +N + S + ++ R A PF+ + S
Sbjct: 288 ALAQNEVHSKQLADKL--RKFGANSVWPFVLKKQS 320
>ref|NP_344908.1| mevalonate kinase [Streptococcus pneumoniae TIGR4]
gi|25388337|pir||C95044 mevalonate kinase [imported] -
Streptococcus pneumoniae (strain TIGR4)
gi|14971851|gb|AAK74548.1| mevalonate kinase
[Streptococcus pneumoniae TIGR4]
Length = 292
Score = 33.5 bits (75), Expect = 2.1
Identities = 23/79 (29%), Positives = 34/79 (42%)
Frame = -3
Query: 577 LGGLLYQCHYSYSACGLGSDGTDRLVHLVQELQHSATSKSEGGTLYGAKITGGGSGGTVC 398
LG +L Q H G+ S D LV L H A GAK++GGG GG +
Sbjct: 215 LGQILSQAHLHLKEIGVSSPEADFLVETT--LSHGAL---------GAKMSGGGLGGCII 263
Query: 397 VIGRNCLKSSEQIFEIQQR 341
+ N + E ++++
Sbjct: 264 ALVTNLTHAQELAERLEEK 282
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,925,275
Number of Sequences: 1393205
Number of extensions: 10904495
Number of successful extensions: 38162
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 33709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37747
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
