Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001246A_C01 KMC001246A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD21832.1| DRL1 protein [Arabidopsis thaliana] 103 4e-22
ref|NP_172840.1| hypothetical protein; protein id: At1g13870.1 [... 101 2e-21
ref|NP_594556.1| similarity to S. cerevisiae kti12 protein [Schi... 42 0.005
ref|NP_505790.1| Putative cytoplasmic protein family member, nem... 33 2.9
gb|EAA09474.1| agCP15124 [Anopheles gambiae str. PEST] 32 5.0
>emb|CAD21832.1| DRL1 protein [Arabidopsis thaliana]
Length = 302
Score = 103 bits (258), Expect(2) = 4e-22
Identities = 52/81 (64%), Positives = 65/81 (80%)
Frame = -2
Query: 543 NSLYELDKPTQEVTNAIVEAXSSALGGPLNGISIGNDLPSIXISRSVALPELRRMRRTFI 364
NSLYELD+ TQE+ NAIVE S LGG ++ +++GN+LP I I R + LPELRR+RRTF+
Sbjct: 208 NSLYELDRATQEIINAIVEQQS--LGGAISRVTLGNELPPIEICRPIGLPELRRLRRTFV 265
Query: 363 KLTGQTSLSGRPPPSDADSAK 301
KL GQ+SLSG P P+DADSAK
Sbjct: 266 KLMGQSSLSGPPLPTDADSAK 286
Score = 21.9 bits (45), Expect(2) = 4e-22
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 302 KAMFIDYLNRE 270
K F+DYLNRE
Sbjct: 286 KRRFVDYLNRE 296
>ref|NP_172840.1| hypothetical protein; protein id: At1g13870.1 [Arabidopsis
thaliana] gi|25361558|pir||H86271 protein F16A14.8
[imported] - Arabidopsis thaliana
gi|8778407|gb|AAF79415.1|AC068197_25 F16A14.8
[Arabidopsis thaliana] gi|28393388|gb|AAO42118.1|
unknown protein [Arabidopsis thaliana]
gi|28827568|gb|AAO50628.1| unknown protein [Arabidopsis
thaliana]
Length = 302
Score = 101 bits (252), Expect(2) = 2e-21
Identities = 51/81 (62%), Positives = 64/81 (78%)
Frame = -2
Query: 543 NSLYELDKPTQEVTNAIVEAXSSALGGPLNGISIGNDLPSIXISRSVALPELRRMRRTFI 364
NSLYELD+ TQE+ NAIVE S LG ++ +++GN+LP I I R + LPELRR+RRTF+
Sbjct: 208 NSLYELDRATQEIINAIVEQQS--LGAAISRVTLGNELPPIEICRPIGLPELRRLRRTFV 265
Query: 363 KLTGQTSLSGRPPPSDADSAK 301
KL GQ+SLSG P P+DADSAK
Sbjct: 266 KLMGQSSLSGPPLPTDADSAK 286
Score = 21.9 bits (45), Expect(2) = 2e-21
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 302 KAMFIDYLNRE 270
K F+DYLNRE
Sbjct: 286 KRRFVDYLNRE 296
>ref|NP_594556.1| similarity to S. cerevisiae kti12 protein [Schizosaccharomyces
pombe] gi|11286197|pir||T50208 yeast kti12 protein
homolog [imported] - fission yeast (Schizosaccharomyces
pombe) gi|6723885|emb|CAB66461.1| similarity to S.
cerevisiae kti12 protein [Schizosaccharomyces pombe]
Length = 281
Score = 42.0 bits (97), Expect = 0.005
Identities = 26/67 (38%), Positives = 38/67 (55%)
Frame = -2
Query: 543 NSLYELDKPTQEVTNAIVEAXSSALGGPLNGISIGNDLPSIXISRSVALPELRRMRRTFI 364
N LYELDK TQ+V I++ + + G + LPS+ +S LP L+R+RR FI
Sbjct: 197 NYLYELDKTTQDVIMLILDNSNDTSLITVPGSKLQIALPSVTVS----LPLLQRLRRQFI 252
Query: 363 KLTGQTS 343
++ Q S
Sbjct: 253 QINRQQS 259
>ref|NP_505790.1| Putative cytoplasmic protein family member, nematode specific
[Caenorhabditis elegans] gi|13548341|emb|CAC35886.1|
Hypothetical protein F17C11.11 [Caenorhabditis elegans]
Length = 282
Score = 32.7 bits (73), Expect = 2.9
Identities = 14/37 (37%), Positives = 19/37 (50%)
Frame = -1
Query: 472 SWWXPEWHFYRK*LAFNXYFKISCAARASQDAAYLHK 362
SW+ P W + F+ YF+I S+D AY HK
Sbjct: 107 SWYWPNWSYGSNPERFSEYFRIKDVHELSKDDAYKHK 143
>gb|EAA09474.1| agCP15124 [Anopheles gambiae str. PEST]
Length = 343
Score = 32.0 bits (71), Expect = 5.0
Identities = 19/60 (31%), Positives = 30/60 (49%)
Frame = -2
Query: 543 NSLYELDKPTQEVTNAIVEAXSSALGGPLNGISIGNDLPSIXISRSVALPELRRMRRTFI 364
N L+ELDK TQ + + I A L GP + I + ++++ +L R RR F+
Sbjct: 256 NFLFELDKSTQTIIDQIAAARKIGLDGP---VEIPQAGMRAEVPANMSVAQLNRHRRQFL 312
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,549,508
Number of Sequences: 1393205
Number of extensions: 7624099
Number of successful extensions: 21664
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21636
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
