Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001245A_C01 KMC001245A_c01
(512 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565733.1| putative RAD50 DNA repair protein; protein id: ... 182 2e-45
pir||D84727 probable RAD50 DNA repair protein [imported] - Arabi... 164 7e-40
ref|NP_071582.1| RAD50 homolog [Rattus norvegicus] gi|9651650|gb... 122 2e-27
ref|NP_033038.1| RAD50 homolog (S. cerevisiae) [Mus musculus] gi... 122 2e-27
ref|NP_597816.1| RAD50 homolog isoform 2 [Homo sapiens] gi|57390... 121 5e-27
>ref|NP_565733.1| putative RAD50 DNA repair protein; protein id: At2g31970.1, supported
by cDNA: gi_7110147 [Arabidopsis thaliana]
gi|7110148|gb|AAF36810.1|AF168748_1 DNA
repair-recombination protein [Arabidopsis thaliana]
gi|20197622|gb|AAD15407.2| putative RAD50 DNA repair
protein [Arabidopsis thaliana] gi|22654997|gb|AAM98090.1|
At2g31970/F22D22.28 [Arabidopsis thaliana]
gi|29028758|gb|AAO64758.1| At2g31970/F22D22.28
[Arabidopsis thaliana]
Length = 1316
Score = 182 bits (463), Expect = 2e-45
Identities = 90/98 (91%), Positives = 95/98 (96%)
Frame = -3
Query: 510 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVIT 331
ASLIIRLALAETFCLNCGILALDEPTTNLDGPN+ESLA ALLRIMEDRKGQENFQLIVIT
Sbjct: 1219 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAGALLRIMEDRKGQENFQLIVIT 1278
Query: 330 HDERFAQLIGRRQHAERYYRVAKDDHQHSIIESPEIFD 217
HDERFAQ+IG+RQHAE+YYRVAKDD QHSIIE+ EIFD
Sbjct: 1279 HDERFAQMIGQRQHAEKYYRVAKDDMQHSIIEAQEIFD 1316
>pir||D84727 probable RAD50 DNA repair protein [imported] - Arabidopsis thaliana
Length = 1292
Score = 164 bits (414), Expect = 7e-40
Identities = 80/85 (94%), Positives = 84/85 (98%)
Frame = -3
Query: 510 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVIT 331
ASLIIRLALAETFCLNCGILALDEPTTNLDGPN+ESLA ALLRIMEDRKGQENFQLIVIT
Sbjct: 1207 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAGALLRIMEDRKGQENFQLIVIT 1266
Query: 330 HDERFAQLIGRRQHAERYYRVAKDD 256
HDERFAQ+IG+RQHAE+YYRVAKDD
Sbjct: 1267 HDERFAQMIGQRQHAEKYYRVAKDD 1291
>ref|NP_071582.1| RAD50 homolog [Rattus norvegicus] gi|9651650|gb|AAF91229.1|AF218576_1
Rad50 [Rattus norvegicus]
Length = 1312
Score = 122 bits (307), Expect = 2e-27
Identities = 63/96 (65%), Positives = 74/96 (76%)
Frame = -3
Query: 510 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVIT 331
ASLIIRLALAETFCLNCGILALDEPTTNLD N ESLA AL+ I++ R Q NFQL+VIT
Sbjct: 1209 ASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVIT 1268
Query: 330 HDERFAQLIGRRQHAERYYRVAKDDHQHSIIESPEI 223
HDE F +L+GR ++ E++YRV K+ Q S I I
Sbjct: 1269 HDEDFVELLGRSEYVEKFYRVKKNIDQCSEIVKSSI 1304
>ref|NP_033038.1| RAD50 homolog (S. cerevisiae) [Mus musculus] gi|7513780|pir||T30845
probable DNA repair protein RAD50 - mouse
gi|1575575|gb|AAC52894.1| RAD50
Length = 1312
Score = 122 bits (306), Expect = 2e-27
Identities = 62/91 (68%), Positives = 73/91 (80%)
Frame = -3
Query: 510 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVIT 331
ASLIIRLALAETFCLNCGILALDEPTTNLD N ESLA AL+ I++ R Q NFQL+VIT
Sbjct: 1209 ASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVIT 1268
Query: 330 HDERFAQLIGRRQHAERYYRVAKDDHQHSII 238
HDE F +L+GR ++ E++YRV K+ Q S I
Sbjct: 1269 HDEDFVELLGRSEYVEKFYRVKKNMDQCSEI 1299
>ref|NP_597816.1| RAD50 homolog isoform 2 [Homo sapiens]
gi|5739043|gb|AAD50326.1|AF057300_1 truncated RAD50
protein [Homo sapiens]
Length = 1173
Score = 121 bits (303), Expect = 5e-27
Identities = 60/91 (65%), Positives = 73/91 (79%)
Frame = -3
Query: 510 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVIT 331
ASLIIRLALAETFCLNCGI+ALDEPTTNLD N ESLA AL+ I++ R Q NFQL+VIT
Sbjct: 1070 ASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVIT 1129
Query: 330 HDERFAQLIGRRQHAERYYRVAKDDHQHSII 238
HDE F +L+GR ++ E++YR+ K+ Q S I
Sbjct: 1130 HDEDFVELLGRSEYVEKFYRIKKNIDQCSEI 1160
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,633,144
Number of Sequences: 1393205
Number of extensions: 7967774
Number of successful extensions: 24982
Number of sequences better than 10.0: 1814
Number of HSP's better than 10.0 without gapping: 23605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24826
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
