Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001244A_C01 KMC001244A_c01
(411 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL38271.1| unknown protein [Arabidopsis thaliana] gi|2213612... 112 1e-24
ref|NP_567816.1| Expressed protein; protein id: At4g28706.1, sup... 112 1e-24
ref|NP_199204.1| putative protein; protein id: At5g43910.1 [Arab... 63 8e-10
gb|AAK27804.1|AC022457_7 hypothetical protein [Oryza sativa (jap... 52 2e-06
ref|NP_458027.1| putative sugar kinase [Salmonella enterica subs... 49 1e-05
>gb|AAL38271.1| unknown protein [Arabidopsis thaliana] gi|22136124|gb|AAM91140.1|
unknown protein [Arabidopsis thaliana]
Length = 404
Score = 112 bits (280), Expect = 1e-24
Identities = 53/76 (69%), Positives = 60/76 (78%)
Frame = -2
Query: 410 GIGSLFGQLYGGTAENIPPSELIDPTGAGDAFAGAILYAICAHFTREKMLCFAANVAAAQ 231
G+G++ G+L+ GTAE IPP EL+D TGAGDAF GA+LYAICA EKML FAA VA
Sbjct: 322 GVGTMTGRLFLGTAEKIPPEELVDTTGAGDAFIGAVLYAICAGMPPEKMLPFAAQVAGCS 381
Query: 230 CRALGARTGLPHHTDP 183
CRALGARTGLPH TDP
Sbjct: 382 CRALGARTGLPHRTDP 397
>ref|NP_567816.1| Expressed protein; protein id: At4g28706.1, supported by cDNA:
gi_16226360 [Arabidopsis thaliana]
gi|16226361|gb|AAL16146.1|AF428378_1 unknown protein
[Arabidopsis thaliana] gi|21928053|gb|AAM78055.1|
At4g29227 [Arabidopsis thaliana]
Length = 401
Score = 112 bits (280), Expect = 1e-24
Identities = 53/76 (69%), Positives = 60/76 (78%)
Frame = -2
Query: 410 GIGSLFGQLYGGTAENIPPSELIDPTGAGDAFAGAILYAICAHFTREKMLCFAANVAAAQ 231
G+G++ G+L+ GTAE IPP EL+D TGAGDAF GA+LYAICA EKML FAA VA
Sbjct: 319 GVGTMTGRLFLGTAEKIPPEELVDTTGAGDAFIGAVLYAICAGMPPEKMLPFAAQVAGCS 378
Query: 230 CRALGARTGLPHHTDP 183
CRALGARTGLPH TDP
Sbjct: 379 CRALGARTGLPHRTDP 394
>ref|NP_199204.1| putative protein; protein id: At5g43910.1 [Arabidopsis thaliana]
Length = 354
Score = 63.2 bits (152), Expect = 8e-10
Identities = 31/56 (55%), Positives = 39/56 (69%)
Frame = -2
Query: 404 GSLFGQLYGGTAENIPPSELIDPTGAGDAFAGAILYAICAHFTREKMLCFAANVAA 237
G++ G+L TAE IP SELID TGAGDAF GA+LY +C E+ML FA+ V +
Sbjct: 284 GNVTGRLVIVTAEKIPSSELIDTTGAGDAFTGALLYGLCTGMALEEMLTFASRVVS 339
>gb|AAK27804.1|AC022457_7 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 359
Score = 51.6 bits (122), Expect = 2e-06
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = -2
Query: 410 GIGSLFGQLYGGTAENIPPSELIDPTGAGDAFAGAILY 297
G G++F +L GTAE+IP SEL+D TG GDAF GA+L+
Sbjct: 317 GSGNIFARLLIGTAESIPASELVDTTGCGDAFIGAVLH 354
>ref|NP_458027.1| putative sugar kinase [Salmonella enterica subsp. enterica serovar
Typhi] gi|16767289|ref|NP_462904.1| putative sugar
kinase [Salmonella typhimurium LT2]
gi|29143898|ref|NP_807240.1| putative sugar kinase
[Salmonella enterica subsp. enterica serovar Typhi Ty2]
gi|25287470|pir||AH0947 probable sugar kinase STY3854
[imported] - Salmonella enterica subsp. enterica serovar
Typhi (strain CT18) gi|6979883|gb|AAF34639.1|AF220439_1
YihV [Salmonella typhimurium] gi|16422587|gb|AAL22863.1|
putative sugar kinase [Salmonella typhimurium LT2]
gi|16504714|emb|CAD09602.1| putative sugar kinase
[Salmonella enterica subsp. enterica serovar Typhi]
gi|29139534|gb|AAO71100.1| putative sugar kinase
[Salmonella enterica subsp. enterica serovar Typhi Ty2]
Length = 298
Score = 49.3 bits (116), Expect = 1e-05
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = -2
Query: 350 ELIDPTGAGDAFAGAILYAICAHFTREKMLCFAANVAAAQCRALGARTGLP 198
E++D TGAGD F GA+ + + + + E+ + FA+ VAA +C G R G+P
Sbjct: 235 EVVDTTGAGDVFHGALAFGLASGYAIEEAVRFASGVAALKCTRPGGRAGIP 285
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,069,332
Number of Sequences: 1393205
Number of extensions: 7606046
Number of successful extensions: 20444
Number of sequences better than 10.0: 277
Number of HSP's better than 10.0 without gapping: 19659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20425
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 7023606888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
