Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001243A_C01 KMC001243A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_495131.1| Predicted CDS, helix-loop-helix transcription f... 32 4.5
gb|AAM44369.1| putative protein contains similarity to topoisome... 31 9.9
dbj|BAC04906.1| unnamed protein product [Homo sapiens] 31 9.9
gb|EAA29809.1| predicted protein [Neurospora crassa] 31 9.9
>ref|NP_495131.1| Predicted CDS, helix-loop-helix transcription factor family member
[Caenorhabditis elegans] gi|7496251|pir||T15548
hypothetical protein C18A3.8 - Caenorhabditis elegans
gi|861354|gb|AAA68375.1| Hypothetical protein C18A3.8
[Caenorhabditis elegans]
Length = 237
Score = 32.0 bits (71), Expect = 4.5
Identities = 21/77 (27%), Positives = 37/77 (47%), Gaps = 1/77 (1%)
Frame = +3
Query: 201 PSVSLVNVPLTVSHSYKYRKFLQ*TPQFSSFMAIGQ*QEKFMLNPQHSISTGNIKHQFFN 380
PSVS T+++S + + +FS ++ + + Q S+ G++ H F +
Sbjct: 156 PSVSSSTPDYTMNNSNNFNNYAV-KEEFSMYLP-----QNYCPQNQMSVPHGDVSHNFNS 209
Query: 381 P*IKIKRS-YSPHQLCY 428
P + S YSP Q+CY
Sbjct: 210 PTSSVSSSSYSPTQMCY 226
>gb|AAM44369.1| putative protein contains similarity to topoisomerase-related
function protein [Dictyostelium discoideum]
gi|28828381|gb|AAM09350.2| similar to Plasmodium
falciparum. Hypothetical protein [Dictyostelium
discoideum]
Length = 1880
Score = 30.8 bits (68), Expect = 9.9
Identities = 18/53 (33%), Positives = 30/53 (55%), Gaps = 2/53 (3%)
Frame = +1
Query: 307 NSRR--NSCSIRNIQSQPAT*NINSSTHKSKLRDHIPHINSATSPSNIELNYN 459
N+R+ S S NI + +T NIN+S+ S ++ IN + +P+N +N N
Sbjct: 134 NNRKLATSFSTSNIINNNSTNNINNSSSSSSNNNNNNSINGSNTPNNTSINSN 186
>dbj|BAC04906.1| unnamed protein product [Homo sapiens]
Length = 226
Score = 30.8 bits (68), Expect = 9.9
Identities = 31/128 (24%), Positives = 54/128 (41%), Gaps = 4/128 (3%)
Frame = +1
Query: 109 HTHFKQMSCKLKTSHMTH*HVRY*NDIYNRLHLFLWLMFL*RSLTHTSIESFYSKLHSFH 288
HTH + L +H+TH H + +H S TH + S ++ +HS
Sbjct: 57 HTHISTHTHPLTVTHITHTH------LLTHIHS--------HSFTHAHMHS-HTHIHSHT 101
Query: 289 HSWQ*ANSRRNSCSIRNIQSQPAT-*NINSSTHKSKLRDHIPHINSATSPSNIELNY--- 456
HS +N+ ++ + + Q +T + +S TH K H ++ T P Y
Sbjct: 102 HSHIHSNTPTHTHPLTSTHIQTSTVTHTHSHTHAHK--HTYTHTSTHTHPLTFTHTYPIT 159
Query: 457 NTILHSPT 480
+ + H+PT
Sbjct: 160 HPLTHTPT 167
>gb|EAA29809.1| predicted protein [Neurospora crassa]
Length = 502
Score = 30.8 bits (68), Expect = 9.9
Identities = 26/89 (29%), Positives = 43/89 (48%)
Frame = +1
Query: 235 SLTHTSIESFYSKLHSFHHSWQ*ANSRRNSCSIRNIQSQPAT*NINSSTHKSKLRDHIPH 414
S++H S S HS HS +S +S ++ A ++ TH RDH H
Sbjct: 257 SISHAHAHSSMSHSHSHTHSHTHTHSHFHSHALSPHAHAQAQDHLG--THH---RDHHSH 311
Query: 415 INSATSPSNIELNYNTILHSPTTE*YSSE 501
+++ SN N+N+I H+ T++ S+E
Sbjct: 312 LDNDPISSNSNSNFNSISHN-TSDSMSTE 339
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,276,840
Number of Sequences: 1393205
Number of extensions: 8195341
Number of successful extensions: 14881
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14879
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
