Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001239A_C01 KMC001239A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189058.1| type 1 membrane protein, putative; protein id: ... 35 3e-05
ref|XP_157171.1| hypothetical protein XP_157171 [Mus musculus] 35 0.53
gb|AAN02758.1| hypothetical protein [lumpy skin disease virus] 34 1.5
ref|NP_659605.1| hypothetical protein [Sheeppox virus] 32 5.9
ref|NP_150467.1| LSDV033 hypothetical protein [lumpy skin diseas... 31 10.0
>ref|NP_189058.1| type 1 membrane protein, putative; protein id: At3g24160.1,
supported by cDNA: 12465., supported by cDNA:
gi_15450742, supported by cDNA: gi_4206764 [Arabidopsis
thaliana] gi|25456269|pir||T52336 probable type 1
membrane protein [imported] - Arabidopsis thaliana
gi|4206765|gb|AAD11797.1| putative type 1 membrane
protein [Arabidopsis thaliana]
gi|11994235|dbj|BAB01357.1| gene_id:MUJ8.6~unknown
protein [Arabidopsis thaliana]
gi|15450743|gb|AAK96643.1| AT3g24160/MUJ8_16
[Arabidopsis thaliana] gi|21537239|gb|AAM61580.1| type 1
membrane protein, putative [Arabidopsis thaliana]
gi|22137144|gb|AAM91417.1| AT3g24160/MUJ8_16
[Arabidopsis thaliana]
Length = 364
Score = 34.7 bits (78), Expect(2) = 3e-05
Identities = 14/24 (58%), Positives = 19/24 (78%)
Frame = -2
Query: 223 QVNEVLIPNPFNRPPAMFVLEVNG 152
++N++L PNPF RP A FVLE+ G
Sbjct: 75 KLNKILKPNPFERPRAAFVLEIAG 98
Score = 34.3 bits (77), Expect(2) = 3e-05
Identities = 17/28 (60%), Positives = 21/28 (74%)
Frame = -3
Query: 393 EVGDAVSVLLGFAPPSTLSAASSSKVLK 310
E+ AVS LLGFAP +TL+A SSK+ K
Sbjct: 51 EISAAVSALLGFAPSATLTADGSSKLNK 78
>ref|XP_157171.1| hypothetical protein XP_157171 [Mus musculus]
Length = 116
Score = 35.4 bits (80), Expect = 0.53
Identities = 14/36 (38%), Positives = 21/36 (57%)
Frame = -1
Query: 356 HLLPPFQLPAHPRSLKDHQ*CSFSNLICTSCFFRGL 249
H+ P +LP + SL +H+ C+F+ L C CF L
Sbjct: 5 HVPPAHELPLNRHSLNEHRNCTFAELSCAHCFASNL 40
>gb|AAN02758.1| hypothetical protein [lumpy skin disease virus]
Length = 735
Score = 33.9 bits (76), Expect = 1.5
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Frame = -2
Query: 235 FCFLQVNEVLIPNPFNRPPAMFVLEV---NGINGFWPW------FYVSLTYSNNYLCLIL 83
FC ++N+++ P N+ M++L + N IN ++ + FY+S T+S N + IL
Sbjct: 422 FCSHKMNKLMFDYPLNKTSTMYLLNIFSSNNINKYFSYKIQPSLFYLSCTHSENNVIFIL 481
>ref|NP_659605.1| hypothetical protein [Sheeppox virus]
Length = 735
Score = 32.0 bits (71), Expect = 5.9
Identities = 17/60 (28%), Positives = 33/60 (54%), Gaps = 9/60 (15%)
Frame = -2
Query: 235 FCFLQVNEVLIPNPFNRPPAMFVLEV---NGINGFWPW------FYVSLTYSNNYLCLIL 83
FC ++N+++ P N+ M++L + N IN ++ + FY+S T++ N + IL
Sbjct: 422 FCSHKMNKLMFEYPLNKTSTMYLLNIFSSNNINKYFSYKFQPSLFYLSCTHNENNVNFIL 481
>ref|NP_150467.1| LSDV033 hypothetical protein [lumpy skin disease virus]
gi|15149044|gb|AAK84994.1| LSDV033 hypothetical protein
[lumpy skin disease virus]
Length = 735
Score = 31.2 bits (69), Expect = 10.0
Identities = 17/60 (28%), Positives = 33/60 (54%), Gaps = 9/60 (15%)
Frame = -2
Query: 235 FCFLQVNEVLIPNPFNRPPAMFVLEV---NGINGFWPW------FYVSLTYSNNYLCLIL 83
FC ++N+++ P N+ M++L + N IN ++ + FY+S T+S + + IL
Sbjct: 422 FCSHKMNKLMFEYPLNKTSTMYLLNIFSSNNINKYFSYKIQPSLFYLSCTHSESNVNFIL 481
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,204,562
Number of Sequences: 1393205
Number of extensions: 9077269
Number of successful extensions: 22588
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22586
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
