Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001238A_C01 KMC001238A_c01
(630 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA69931.1| PR10-1 protein [Medicago truncatula] gi|13928069... 179 3e-44
sp|Q43560|PR1_MEDSA Class-10 pathogenesis-related protein 1 (MSP... 177 1e-43
pir||T09526 stress response gene 1 - alfalfa gi|1136333|gb|AAB58... 176 3e-43
emb|CAC37691.1| class 10 PR protein [Medicago sativa] 174 7e-43
gb|AAL32031.2|AF439272_1 drought-induced protein RPR-10 [Retama ... 172 3e-42
>emb|CAA69931.1| PR10-1 protein [Medicago truncatula] gi|13928069|emb|CAC37690.1|
class 10 PR protein [Medicago sativa]
Length = 157
Score = 179 bits (454), Expect = 3e-44
Identities = 83/157 (52%), Positives = 115/157 (72%)
Frame = +3
Query: 15 MGVVSDEFSTPAAVAPARLFKAMSTDFHNVFPKIVEPIQSVEFIEGTGAAGTIKKMTVLD 194
MGV + E T + VAPARL+KA+ TD N+ PK+++ IQS+E +EG G AGTIKK+T ++
Sbjct: 1 MGVFNFEDETTSIVAPARLYKALVTDSDNLIPKVIDAIQSIEIVEGNGGAGTIKKLTFVE 60
Query: 195 GGESKYMLHRVDEVDEKELVYNFSIIGGTGLADPLEKVQFKSKFVEGPNGGCIREVQAQY 374
GGE+KY LH+VD VD+ YN+SI+GG GL D +EK+ F+SK GP+GG I ++ +Y
Sbjct: 61 GGETKYDLHKVDLVDDVNFAYNYSIVGGGGLPDTVEKISFESKLSAGPDGGSIAKLTVKY 120
Query: 375 FTKGDTTLSEETVKASQAKVNGIVKIAEGFLLANPDY 485
FTKGD SEE +K +A+ +G+ K EG++LANPDY
Sbjct: 121 FTKGDAAPSEEEIKGGKARGDGLFKALEGYVLANPDY 157
>sp|Q43560|PR1_MEDSA Class-10 pathogenesis-related protein 1 (MSPR10-1)
gi|7442207|pir||T09659 pathogenesis-related protein
class 10 - alfalfa gi|1419683|emb|CAA67375.1| PR protein
from class 10 [Medicago sativa]
Length = 157
Score = 177 bits (449), Expect = 1e-43
Identities = 82/157 (52%), Positives = 114/157 (72%)
Frame = +3
Query: 15 MGVVSDEFSTPAAVAPARLFKAMSTDFHNVFPKIVEPIQSVEFIEGTGAAGTIKKMTVLD 194
MGV + E T + VAPARL+KA+ TD N+ PK+++ IQS+E +EG G AGTIKK+T ++
Sbjct: 1 MGVFNFEDETTSIVAPARLYKALVTDSDNLIPKVIDAIQSIEIVEGNGGAGTIKKLTFVE 60
Query: 195 GGESKYMLHRVDEVDEKELVYNFSIIGGTGLADPLEKVQFKSKFVEGPNGGCIREVQAQY 374
GGE+KY LH+VD VD+ YN+SI+GG GL D +EK+ F+SK GP+GG ++ +Y
Sbjct: 61 GGETKYDLHKVDLVDDVNFAYNYSIVGGGGLPDTVEKISFESKLSAGPDGGSTAKLTVKY 120
Query: 375 FTKGDTTLSEETVKASQAKVNGIVKIAEGFLLANPDY 485
FTKGD SEE +K +A+ +G+ K EG++LANPDY
Sbjct: 121 FTKGDAAPSEEEIKGGKARGDGLFKALEGYVLANPDY 157
>pir||T09526 stress response gene 1 - alfalfa gi|1136333|gb|AAB58315.1| Srg1
[Medicago sativa]
Length = 157
Score = 176 bits (445), Expect = 3e-43
Identities = 82/157 (52%), Positives = 113/157 (71%)
Frame = +3
Query: 15 MGVVSDEFSTPAAVAPARLFKAMSTDFHNVFPKIVEPIQSVEFIEGTGAAGTIKKMTVLD 194
MGV + E T + VAPARL+KA+ TD N+ PK+++ IQS+E +EG G AGTIKK T ++
Sbjct: 1 MGVFNFEDETTSIVAPARLYKALVTDSDNLIPKVIDAIQSIEIVEGNGGAGTIKKPTFVE 60
Query: 195 GGESKYMLHRVDEVDEKELVYNFSIIGGTGLADPLEKVQFKSKFVEGPNGGCIREVQAQY 374
GGE+KY LH+VD VD+ YN+SI+GG GL D +EK+ F+SK GP+GG ++ +Y
Sbjct: 61 GGETKYDLHKVDLVDDVNFAYNYSIVGGGGLPDTVEKISFESKLSAGPDGGSTAKLTVKY 120
Query: 375 FTKGDTTLSEETVKASQAKVNGIVKIAEGFLLANPDY 485
FTKGD SEE +K +A+ +G+ K EG++LANPDY
Sbjct: 121 FTKGDAAPSEEEIKGGKARGDGLFKALEGYVLANPDY 157
>emb|CAC37691.1| class 10 PR protein [Medicago sativa]
Length = 158
Score = 174 bits (442), Expect = 7e-43
Identities = 82/158 (51%), Positives = 113/158 (70%)
Frame = +3
Query: 15 MGVVSDEFSTPAAVAPARLFKAMSTDFHNVFPKIVEPIQSVEFIEGTGAAGTIKKMTVLD 194
MGV++ E T + VAPA L KA TD N+ PK+V I+S++ +EG G +GTIKK+T ++
Sbjct: 1 MGVINFEEETTSIVAPATLHKAFVTDADNLIPKVVHVIKSIDIVEGNGGSGTIKKLTFVE 60
Query: 195 GGESKYMLHRVDEVDEKELVYNFSIIGGTGLADPLEKVQFKSKFVEGPNGGCIREVQAQY 374
GGE+KY LH+VD VD+ YN+SI+GG L D +EK+ F++K GPNGG I ++ +Y
Sbjct: 61 GGETKYDLHKVDLVDDANWAYNYSIVGGDSLPDTVEKISFEAKLSAGPNGGSIAKLSVKY 120
Query: 375 FTKGDTTLSEETVKASQAKVNGIVKIAEGFLLANPDYN 488
FTKGD T SEE +K+ +AK +G+ K EG+ LANPDYN
Sbjct: 121 FTKGDATPSEEELKSGKAKGDGLFKALEGYCLANPDYN 158
>gb|AAL32031.2|AF439272_1 drought-induced protein RPR-10 [Retama raetam]
Length = 157
Score = 172 bits (436), Expect = 3e-42
Identities = 81/157 (51%), Positives = 110/157 (69%)
Frame = +3
Query: 15 MGVVSDEFSTPAAVAPARLFKAMSTDFHNVFPKIVEPIQSVEFIEGTGAAGTIKKMTVLD 194
MGV + + + VAPA+LFKA D + PK+VEPIQS+E +EG G GT+KK+TV++
Sbjct: 1 MGVFTFKEENVSPVAPAKLFKAFVKDSDTIIPKVVEPIQSIEIVEGNGGPGTVKKLTVVE 60
Query: 195 GGESKYMLHRVDEVDEKELVYNFSIIGGTGLADPLEKVQFKSKFVEGPNGGCIREVQAQY 374
GG++ Y+LH++D +DE YN+SIIGGTGL + LEKV F++K + GPNGG + EV Y
Sbjct: 61 GGKTSYVLHKIDAIDEANFGYNYSIIGGTGLEEILEKVTFETKLLPGPNGGSVGEVTVTY 120
Query: 375 FTKGDTTLSEETVKASQAKVNGIVKIAEGFLLANPDY 485
TKGD LS+E + S+AK + K E F+LANPDY
Sbjct: 121 HTKGDAPLSDEVREGSKAKGTALFKAVEDFVLANPDY 157
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 595,185,552
Number of Sequences: 1393205
Number of extensions: 13892744
Number of successful extensions: 38086
Number of sequences better than 10.0: 295
Number of HSP's better than 10.0 without gapping: 36428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37862
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
