Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001236A_C01 KMC001236A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200167.1| EspB-like protein; protein id: At5g53550.1 [Ara... 79 3e-14
ref|NP_197826.1| putative protein; protein id: At5g24380.1 [Arab... 72 2e-12
gb|AAM98073.1| AT5g24380/K16H17_9 [Arabidopsis thaliana] gi|2902... 72 2e-12
gb|AAG17016.2|AF186234_1 iron-phytosiderophore transporter prote... 70 2e-11
ref|NP_567694.1| putative protein; protein id: At4g24120.1, supp... 64 1e-09
>ref|NP_200167.1| EspB-like protein; protein id: At5g53550.1 [Arabidopsis thaliana]
gi|9759194|dbj|BAB09731.1| EspB-like protein
[Arabidopsis thaliana]
Length = 669
Score = 78.6 bits (192), Expect = 3e-14
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = -2
Query: 483 EXGLMVPAVASGLICGDGMWILPSSILALLKVRPPICMSFFPSR 352
+ GLMVPAVASGLICGDG+WILPSS+LAL VRPPICM F PS+
Sbjct: 623 KAGLMVPAVASGLICGDGLWILPSSVLALAGVRPPICMGFMPSK 666
>ref|NP_197826.1| putative protein; protein id: At5g24380.1 [Arabidopsis thaliana]
gi|10177899|dbj|BAB11231.1| contains similarity to
integral membrane protein~gene_id:K16H17.9 [Arabidopsis
thaliana]
Length = 652
Score = 72.4 bits (176), Expect = 2e-12
Identities = 32/37 (86%), Positives = 36/37 (96%)
Frame = -2
Query: 474 LMVPAVASGLICGDGMWILPSSILALLKVRPPICMSF 364
+MVPAVASGLICGDG+WILPSS+LAL KVRPPICM+F
Sbjct: 612 VMVPAVASGLICGDGLWILPSSLLALAKVRPPICMNF 648
>gb|AAM98073.1| AT5g24380/K16H17_9 [Arabidopsis thaliana]
gi|29028724|gb|AAO64741.1| AT5g24380/K16H17_9
[Arabidopsis thaliana]
Length = 409
Score = 72.4 bits (176), Expect = 2e-12
Identities = 32/37 (86%), Positives = 36/37 (96%)
Frame = -2
Query: 474 LMVPAVASGLICGDGMWILPSSILALLKVRPPICMSF 364
+MVPAVASGLICGDG+WILPSS+LAL KVRPPICM+F
Sbjct: 369 VMVPAVASGLICGDGLWILPSSLLALAKVRPPICMNF 405
>gb|AAG17016.2|AF186234_1 iron-phytosiderophore transporter protein yellow stripe 1 [Zea
mays]
Length = 682
Score = 69.7 bits (169), Expect = 2e-11
Identities = 31/42 (73%), Positives = 34/42 (80%)
Frame = -2
Query: 483 EXGLMVPAVASGLICGDGMWILPSSILALLKVRPPICMSFFP 358
E MVPAVASGLICGDG+W PSSILAL K++PPICM F P
Sbjct: 639 EAVFMVPAVASGLICGDGIWTFPSSILALAKIKPPICMKFTP 680
>ref|NP_567694.1| putative protein; protein id: At4g24120.1, supported by cDNA:
gi_14423555 [Arabidopsis thaliana]
Length = 665
Score = 63.5 bits (153), Expect = 1e-09
Identities = 27/39 (69%), Positives = 33/39 (84%)
Frame = -2
Query: 471 MVPAVASGLICGDGMWILPSSILALLKVRPPICMSFFPS 355
MVPAVASGLICG+G+W LP+++LAL V+PPICM F S
Sbjct: 627 MVPAVASGLICGEGLWTLPAAVLALAGVKPPICMKFLAS 665
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,042,645
Number of Sequences: 1393205
Number of extensions: 6915166
Number of successful extensions: 13446
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 13202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13446
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
