Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001235A_C01 KMC001235A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565852.1| Expressed protein; protein id: At2g36835.1, sup... 172 2e-42
dbj|BAC07355.1| P0413G02.12 [Oryza sativa (japonica cultivar-gro... 132 4e-30
ref|NP_498096.1| WD domains of G protein beta type containing pr... 35 0.78
dbj|BAB60932.1| P0682B08.2 [Oryza sativa (japonica cultivar-grou... 33 1.7
gb|AAK61267.1|AE006466_2 unknown [Homo sapiens] 33 2.3
>ref|NP_565852.1| Expressed protein; protein id: At2g36835.1, supported by cDNA:
97088., supported by cDNA: gi_17065551 [Arabidopsis
thaliana] gi|17065552|gb|AAL32930.1| Unknown protein
[Arabidopsis thaliana] gi|20197944|gb|AAM15323.1|
Expressed protein [Arabidopsis thaliana]
gi|21387001|gb|AAM47904.1| unknown protein [Arabidopsis
thaliana] gi|21618103|gb|AAM67153.1| unknown
[Arabidopsis thaliana] gi|26452299|dbj|BAC43236.1|
unknown protein [Arabidopsis thaliana]
Length = 124
Score = 172 bits (436), Expect = 2e-42
Identities = 79/113 (69%), Positives = 99/113 (86%)
Frame = -3
Query: 547 PWRALSSSMKPVPEIHQSPVLRISQNPFSDYAISVMRHPDPIGGGFGEGAIVKAAGPDCI 368
PWR SS +PVP+I +SPVL ISQNP +DYAISVM+HP+P+GGGF A++++AGP+C+
Sbjct: 14 PWRV--SSGRPVPKISRSPVLSISQNPETDYAISVMKHPNPVGGGFAMEAVLESAGPECV 71
Query: 367 VPGQAMPIKLLGLKVWPINVDLKFLEPVGRELKQLGKFMDDAVELMNKSFIER 209
VPGQ P++LLG+KVWP+ VDLKFLEPVG+ELK LGKFMD+AVELMNKSFI+R
Sbjct: 72 VPGQVTPLRLLGVKVWPVEVDLKFLEPVGKELKMLGKFMDNAVELMNKSFIDR 124
>dbj|BAC07355.1| P0413G02.12 [Oryza sativa (japonica cultivar-group)]
Length = 150
Score = 132 bits (331), Expect = 4e-30
Identities = 58/102 (56%), Positives = 81/102 (78%), Gaps = 3/102 (2%)
Frame = -3
Query: 547 PWRALSSS---MKPVPEIHQSPVLRISQNPFSDYAISVMRHPDPIGGGFGEGAIVKAAGP 377
PWRA ++ ++PVP IH +PVLR++Q+ +S YA++VM+HPDPIG G A+V+AAGP
Sbjct: 47 PWRAAATGAAGIRPVPRIHHAPVLRVAQDDYSAYALAVMKHPDPIGEGLAMEAMVEAAGP 106
Query: 376 DCIVPGQAMPIKLLGLKVWPINVDLKFLEPVGRELKQLGKFM 251
+CIVPGQ P++LLGLKVWP+++++KFLEP GREL + K M
Sbjct: 107 ECIVPGQQAPLRLLGLKVWPLDIEMKFLEPFGRELHSMKKVM 148
>ref|NP_498096.1| WD domains of G protein beta type containing protein
[Caenorhabditis elegans] gi|2494916|sp|Q10051|YRW4_CAEEL
Hypothetical 55.2 kDa Trp-Asp repeats containing protein
T10F2.4 in chromosome III gi|7507635|pir||T16846
hypothetical protein T10F2.4 - Caenorhabditis elegans
gi|13384539|gb|AAK21467.1| Hypothetical protein T10F2.4
[Caenorhabditis elegans]
Length = 509
Score = 34.7 bits (78), Expect = 0.78
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 544 WRALSSSMKPVPEIHQSPVLRISQNPFSDYAIS 446
W A SS K + ++HQ+PV IS N DY +S
Sbjct: 295 WSATDSSSKAIIDVHQAPVTDISLNASGDYILS 327
>dbj|BAB60932.1| P0682B08.2 [Oryza sativa (japonica cultivar-group)]
gi|15623801|dbj|BAB67861.1| P0487H02.21 [Oryza sativa
(japonica cultivar-group)]
Length = 494
Score = 33.5 bits (75), Expect = 1.7
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +3
Query: 240 TASSMNFPSCLSSRPTGSKNFRSTFIGHTLRP-SSLMGIA*PGT----MQSGPAALTIAP 404
TA+S P SS+ T + + G RP SS MG+ T + GP A T +
Sbjct: 187 TAASSAAPKTPSSQSTEDEELMGSATGRARRPPSSSMGVGGEATETGGIGGGPPAPTSSS 246
Query: 405 SPNPPP 422
SP PPP
Sbjct: 247 SPPPPP 252
>gb|AAK61267.1|AE006466_2 unknown [Homo sapiens]
Length = 639
Score = 33.1 bits (74), Expect = 2.3
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 451 ISVMRHPD--PIGGGFGEGAIVKAAGPDCIVPGQAMPIKLLGLKVWPINVDLKFLEP 287
IS R PD P+ G G++V + G VPG P LGL W DL L P
Sbjct: 206 ISPGRFPDIPPLKGATSGGSLVPSNGGRRCVPGNWEPHPALGLSGWSFPTDLAGLTP 262
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,638,991
Number of Sequences: 1393205
Number of extensions: 11267282
Number of successful extensions: 31801
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 29975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31732
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
