Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001231A_C01 KMC001231A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173582.1| unknown protein; protein id: At1g21630.1 [Arabi... 65 4e-10
ref|NP_173499.1| hypothetical protein; protein id: At1g20760.1 [... 64 1e-09
dbj|BAA85413.1| ESTs AU031435(E61570),AU078245(E61570) correspon... 45 8e-04
ref|NP_719544.1| AcrB/AcrD/AcrF family protein [Shewanella oneid... 33 2.4
ref|NP_050254.1| Hypothetical protein [Human herpesvirus 6B] gi|... 33 2.4
>ref|NP_173582.1| unknown protein; protein id: At1g21630.1 [Arabidopsis thaliana]
gi|25518104|pir||C86349 F8K7.4 protein - Arabidopsis
thaliana gi|5263313|gb|AAD41415.1|AC007727_4 Contains
similarity to gb|U07707 epidermal growth factor receptor
substrate (eps15) from Homo sapiens and contains 2
PF|00036 EF hand domains. ESTs gb|T44428 and gb|AA395440
come from this gene. [Arabidopsis thaliana]
Length = 1181
Score = 65.5 bits (158), Expect = 4e-10
Identities = 41/81 (50%), Positives = 53/81 (64%), Gaps = 8/81 (9%)
Frame = -2
Query: 559 NLSRFDSF--RTHDSVSLP-AGET----LARFDSIRSSVDYDHGHGFPAFDDSDPFGS-G 404
N R+DSF +++DS S A ET L RFDSI S+ D D+ HGF FDD DPFGS G
Sbjct: 1102 NYQRYDSFNAQSYDSSSNNNASETPKASLTRFDSIGSTRDSDYSHGF-GFDDHDPFGSTG 1160
Query: 403 PFRTSSESPTPRRGSDSWSAF 341
PF+T++ + R SD+W+AF
Sbjct: 1161 PFKTTTTTAETPRSSDNWNAF 1181
>ref|NP_173499.1| hypothetical protein; protein id: At1g20760.1 [Arabidopsis thaliana]
gi|8886934|gb|AAF80620.1|AC069251_13 F2D10.25
[Arabidopsis thaliana]
Length = 1019
Score = 64.3 bits (155), Expect = 1e-09
Identities = 37/76 (48%), Positives = 51/76 (66%), Gaps = 2/76 (2%)
Frame = -2
Query: 562 DNLSRFDSFRTHDSVSLPAGETLARFDSIRSSVDYDHGHGFPAFDDSDPFGS-GPFRTSS 386
+ SRFDS + G +L+RFDS+ S+ D+ HG+ +FDD+DPFGS GPF+ SS
Sbjct: 950 EKFSRFDSINSSKDFG---GPSLSRFDSMNSTKDFSGSHGY-SFDDADPFGSTGPFKVSS 1005
Query: 385 -ESPTPRRGSDSWSAF 341
ESPT R SD+W++F
Sbjct: 1006 DESPTKR--SDNWNSF 1019
>dbj|BAA85413.1| ESTs AU031435(E61570),AU078245(E61570) correspond to a region of
the predicted gene.~hypothetical protein [Oryza sativa
(japonica cultivar-group)]
Length = 440
Score = 44.7 bits (104), Expect = 8e-04
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = -2
Query: 553 SRFDSFRTHDSVSLPAGETLARFDSIRSSVDYDHGHGFPAFDDSDPFG-SGPFRTS 389
SRF F DS++ GE + FDS +SS ++ F +FDD+DPFG SGPF+ S
Sbjct: 370 SRFSRF---DSINNSKGENVTGFDSPKSSTNFGR---FDSFDDADPFGSSGPFKAS 419
>ref|NP_719544.1| AcrB/AcrD/AcrF family protein [Shewanella oneidensis MR-1]
gi|24350364|gb|AAN56988.1|AE015832_4 AcrB/AcrD/AcrF
family protein [Shewanella oneidensis MR-1]
Length = 1023
Score = 33.1 bits (74), Expect = 2.4
Identities = 19/53 (35%), Positives = 31/53 (57%), Gaps = 4/53 (7%)
Frame = -3
Query: 456 IMVMAFQLLMTRIPLAL----GRLGLHQKVQLPEEGLIVGVLFSLEVLPLPYI 310
I++ + ++++ IPLAL G LGL + GL+ G FSL V+P+ Y+
Sbjct: 954 ILMTSLTMILSAIPLALATGPGSLGLANIGLVLVGGLLAGTFFSLFVVPVAYV 1006
>ref|NP_050254.1| Hypothetical protein [Human herpesvirus 6B]
gi|1717980|sp|P52457|UL07_HSV6Z Protein U75
gi|11282480|pir||T44220 hypothetical protein U75
[imported] - human herpesvirus 6 (strain Z29)
gi|405178|gb|AAB06358.1| U75 [Human herpesvirus 6B]
gi|2769713|gb|AAC40325.1| H75 [Human herpesvirus 6]
Length = 249
Score = 33.1 bits (74), Expect = 2.4
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 417 PLALGRLGLHQKVQLPEEGLIVGVLFSLEVLPL 319
P R +H KV PEE ++ G++F+LE LPL
Sbjct: 98 PFQFKRRLIHMKVDTPEEFMLCGLVFALENLPL 130
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,283,340
Number of Sequences: 1393205
Number of extensions: 11113799
Number of successful extensions: 28491
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 27170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28417
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
