Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001230A_C01 KMC001230A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87154.1|AF480496_8 putative SET-domain transcriptional reg... 47 1e-04
gb|AAO32935.1| SET domain protein SDG117 [Zea mays] 46 2e-04
pir||C85361 hypothetical protein AT4g30860 [imported] - Arabidop... 39 0.051
ref|NP_567859.1| putative protein; protein id: At4g30860.1, supp... 39 0.051
ref|NP_491340.2| SET domain and WW domain containing protein fam... 38 0.087
>gb|AAL87154.1|AF480496_8 putative SET-domain transcriptional regulator [Oryza sativa
(japonica cultivar-group)]
Length = 761
Score = 47.0 bits (110), Expect = 1e-04
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = -3
Query: 433 KQIALGEELTFDY-HKVGPGKGTPCLCGSSNCGGRLY 326
+ I +GEEL +DY K+ PG G PC CG+ NC GR+Y
Sbjct: 725 QDILMGEELAYDYGQKLLPGDGCPCHCGAKNCRGRVY 761
>gb|AAO32935.1| SET domain protein SDG117 [Zea mays]
Length = 1198
Score = 46.2 bits (108), Expect = 2e-04
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = -3
Query: 433 KQIALGEELTFDYH-KVGPGKGTPCLCGSSNCGGRLY 326
+ IA+GEEL +DY K+ G G PC CG++NC GR+Y
Sbjct: 1162 QDIAVGEELAYDYRQKLVAGDGCPCHCGTTNCRGRVY 1198
>pir||C85361 hypothetical protein AT4g30860 [imported] - Arabidopsis thaliana
gi|2980780|emb|CAA18207.1| putative protein [Arabidopsis
thaliana] gi|7269987|emb|CAB79804.1| putative protein
[Arabidopsis thaliana]
Length = 477
Score = 38.5 bits (88), Expect = 0.051
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = -3
Query: 439 SCKQIALGEELTFDYHKVGPGKGTPCLCGSSNCGGRL 329
+ +QI GE LT+DY V G C CGS NC G L
Sbjct: 408 AARQIEAGEPLTYDYRFVQFGPEVKCNCGSENCQGYL 444
>ref|NP_567859.1| putative protein; protein id: At4g30860.1, supported by cDNA:
gi_15292920, supported by cDNA: gi_20465680 [Arabidopsis
thaliana] gi|15292921|gb|AAK92831.1| unknown protein
[Arabidopsis thaliana] gi|20465681|gb|AAM20309.1|
unknown protein [Arabidopsis thaliana]
Length = 497
Score = 38.5 bits (88), Expect = 0.051
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = -3
Query: 439 SCKQIALGEELTFDYHKVGPGKGTPCLCGSSNCGGRL 329
+ +QI GE LT+DY V G C CGS NC G L
Sbjct: 428 AARQIEAGEPLTYDYRFVQFGPEVKCNCGSENCQGYL 464
>ref|NP_491340.2| SET domain and WW domain containing protein family member (183.5
kD) [Caenorhabditis elegans] gi|20198793|gb|AAB37626.2|
Hypothetical protein C43E11.3a [Caenorhabditis elegans]
Length = 1604
Score = 37.7 bits (86), Expect = 0.087
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 445 FVSCKQIALGEELTFDYHKVGPGK-GTPCLCGSSNCGG 335
F S + I GEE+TFDY V G+ C CGS++C G
Sbjct: 788 FFSKRFIKAGEEITFDYQFVNYGRDAQQCFCGSASCSG 825
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,285,757
Number of Sequences: 1393205
Number of extensions: 8953546
Number of successful extensions: 18862
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 18326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18796
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
