Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001229A_C01 KMC001229A_c01
(492 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_055478.1| KIAA0677 gene product [Homo sapiens] gi|3327168... 33 1.3
dbj|BAC35653.1| unnamed protein product [Mus musculus] 33 2.2
ref|XP_233441.1| similar to KIAA0677 gene product [Homo sapiens]... 33 2.2
ref|XP_131638.2| hypothetical protein LOC230674 [Mus musculus] 33 2.2
gb|AAH28866.1| Similar to KIAA0677 gene product [Mus musculus] 33 2.2
>ref|NP_055478.1| KIAA0677 gene product [Homo sapiens] gi|3327168|dbj|BAA31652.1|
KIAA0677 protein [Homo sapiens]
gi|12803467|gb|AAH02558.1|AAH02558 KIAA0677 gene product
[Homo sapiens]
Length = 1064
Score = 33.5 bits (75), Expect = 1.3
Identities = 12/27 (44%), Positives = 19/27 (69%)
Frame = +2
Query: 38 RREPINHIPYHHPLNTSECTND*NTTK 118
RR+P++ +P HHPL EC +D T++
Sbjct: 596 RRQPLSKLPRHHPLVLQECVSDDETSE 622
>dbj|BAC35653.1| unnamed protein product [Mus musculus]
Length = 1036
Score = 32.7 bits (73), Expect = 2.2
Identities = 12/27 (44%), Positives = 19/27 (69%)
Frame = +2
Query: 38 RREPINHIPYHHPLNTSECTND*NTTK 118
RR+P++ +P HHPL EC +D T++
Sbjct: 596 RRQPLSKLPRHHPLVLQECGSDDETSE 622
>ref|XP_233441.1| similar to KIAA0677 gene product [Homo sapiens] [Rattus norvegicus]
Length = 1272
Score = 32.7 bits (73), Expect = 2.2
Identities = 12/27 (44%), Positives = 19/27 (69%)
Frame = +2
Query: 38 RREPINHIPYHHPLNTSECTND*NTTK 118
RR+P++ +P HHPL EC +D T++
Sbjct: 748 RRQPLSKLPRHHPLVLQECGSDDETSE 774
>ref|XP_131638.2| hypothetical protein LOC230674 [Mus musculus]
Length = 1033
Score = 32.7 bits (73), Expect = 2.2
Identities = 12/27 (44%), Positives = 19/27 (69%)
Frame = +2
Query: 38 RREPINHIPYHHPLNTSECTND*NTTK 118
RR+P++ +P HHPL EC +D T++
Sbjct: 596 RRQPLSKLPRHHPLVLQECGSDDETSE 622
>gb|AAH28866.1| Similar to KIAA0677 gene product [Mus musculus]
Length = 1033
Score = 32.7 bits (73), Expect = 2.2
Identities = 12/27 (44%), Positives = 19/27 (69%)
Frame = +2
Query: 38 RREPINHIPYHHPLNTSECTND*NTTK 118
RR+P++ +P HHPL EC +D T++
Sbjct: 596 RRQPLSKLPRHHPLVLQECGSDDETSE 622
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,226,858
Number of Sequences: 1393205
Number of extensions: 8665846
Number of successful extensions: 14606
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14603
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
