Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001228A_C01 KMC001228A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188285.1| kinesin-related protein TBK5, putative; protein... 164 5e-40
dbj|BAB02754.1| contains similarity to kinesin protein~gene_id:M... 164 5e-40
ref|NP_680704.1| similar to kinesin-related protein TBK5, putati... 157 6e-38
gb|AAK70904.1|AC087551_3 kinesin-like protein [Oryza sativa] 147 1e-34
gb|AAK91819.1|AF272756_1 kinesin heavy chain [Zea mays] 103 1e-21
>ref|NP_188285.1| kinesin-related protein TBK5, putative; protein id: At3g16630.1,
supported by cDNA: gi_15810128 [Arabidopsis thaliana]
gi|15810129|gb|AAL07208.1| putative kinesin protein
[Arabidopsis thaliana]
Length = 794
Score = 164 bits (416), Expect = 5e-40
Identities = 87/103 (84%), Positives = 91/103 (87%)
Frame = -1
Query: 511 TGSRLYEAESSPDGNISAVLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDPPGSRIDN 332
T SR YE + S D N+ A+LEEEEALIAAHRKEIEDTMEIVREEMKLLAEVD PGS I+N
Sbjct: 692 TASRQYETDPSLDENLDALLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSMIEN 751
Query: 331 YVTPLSFVLSRKAASLVGLQARLARFQHRLKEQEILSRKRVPR 203
YVT LSFVLSRKAA LV LQARLARFQHRLKEQEILSRKRVPR
Sbjct: 752 YVTQLSFVLSRKAAGLVSLQARLARFQHRLKEQEILSRKRVPR 794
>dbj|BAB02754.1| contains similarity to kinesin protein~gene_id:MGL6.9 [Arabidopsis
thaliana]
Length = 799
Score = 164 bits (416), Expect = 5e-40
Identities = 87/103 (84%), Positives = 91/103 (87%)
Frame = -1
Query: 511 TGSRLYEAESSPDGNISAVLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDPPGSRIDN 332
T SR YE + S D N+ A+LEEEEALIAAHRKEIEDTMEIVREEMKLLAEVD PGS I+N
Sbjct: 697 TASRQYETDPSLDENLDALLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSMIEN 756
Query: 331 YVTPLSFVLSRKAASLVGLQARLARFQHRLKEQEILSRKRVPR 203
YVT LSFVLSRKAA LV LQARLARFQHRLKEQEILSRKRVPR
Sbjct: 757 YVTQLSFVLSRKAAGLVSLQARLARFQHRLKEQEILSRKRVPR 799
>ref|NP_680704.1| similar to kinesin-related protein TBK5, putative; protein id:
At4g15885.1 [Arabidopsis thaliana]
Length = 113
Score = 157 bits (398), Expect = 6e-38
Identities = 87/108 (80%), Positives = 90/108 (82%), Gaps = 1/108 (0%)
Frame = -1
Query: 523 STVTTGSRLYEA-ESSPDGNISAVLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDPPG 347
+T T SR YE E S D NI A+LEEEE LI AHRKEIEDTMEIV EEMKLLA+VD PG
Sbjct: 6 NTSDTSSRQYETTEPSLDENIDALLEEEETLITAHRKEIEDTMEIVHEEMKLLAKVDRPG 65
Query: 346 SRIDNYVTPLSFVLSRKAASLVGLQARLARFQHRLKEQEILSRKRVPR 203
S IDNYVT LSFVLSRKAA LV LQARLARFQHRLKEQEILSRKRVPR
Sbjct: 66 SMIDNYVTQLSFVLSRKAAGLVSLQARLARFQHRLKEQEILSRKRVPR 113
>gb|AAK70904.1|AC087551_3 kinesin-like protein [Oryza sativa]
Length = 800
Score = 147 bits (370), Expect = 1e-34
Identities = 83/108 (76%), Positives = 87/108 (79%), Gaps = 1/108 (0%)
Frame = -1
Query: 523 STVTTGSRLYEAESSPDG-NISAVLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDPPG 347
S SR E ESS D I A+LEEEEALIAAHRKEIE+TMEIVREEM LLAEVD PG
Sbjct: 693 SASQNSSRQSEKESSCDDVEIDAILEEEEALIAAHRKEIENTMEIVREEMNLLAEVDQPG 752
Query: 346 SRIDNYVTPLSFVLSRKAASLVGLQARLARFQHRLKEQEILSRKRVPR 203
S IDNYVT LSF+LSRKAA LV LQARLARFQHRLKEQEILSRK+ R
Sbjct: 753 SLIDNYVTQLSFLLSRKAAGLVSLQARLARFQHRLKEQEILSRKKSSR 800
>gb|AAK91819.1|AF272756_1 kinesin heavy chain [Zea mays]
Length = 430
Score = 103 bits (258), Expect = 1e-21
Identities = 58/81 (71%), Positives = 64/81 (78%), Gaps = 1/81 (1%)
Frame = -1
Query: 523 STVTTGSRLYEAESSPDG-NISAVLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDPPG 347
++ + SR E ESS D I A+LEEEEALIAAHRKEIE+TMEIVREEM LLAEVD PG
Sbjct: 330 TSASASSRQSEKESSCDDVEIDAILEEEEALIAAHRKEIENTMEIVREEMNLLAEVDQPG 389
Query: 346 SRIDNYVTPLSFVLSRKAASL 284
S IDNYVT LSF+LSRKA L
Sbjct: 390 SLIDNYVTQLSFLLSRKACRL 410
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,170,029
Number of Sequences: 1393205
Number of extensions: 10376927
Number of successful extensions: 30195
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 28293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30021
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
