Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001227A_C01 KMC001227A_c01
(717 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09892 hypothetical protein T22A6.120 - Arabidopsis thalian... 113 3e-24
dbj|BAB88998.1| P0401G10.6 [Oryza sativa (japonica cultivar-group)] 111 9e-24
dbj|BAC07382.1| OJ1641_C04.15 [Oryza sativa (japonica cultivar-g... 107 1e-22
ref|NP_564307.1| expressed protein; protein id: At1g28380.1, sup... 79 8e-14
ref|NP_172931.1| hypothetical protein; protein id: At1g14780.1, ... 76 5e-13
>pir||T09892 hypothetical protein T22A6.120 - Arabidopsis thaliana
gi|5051771|emb|CAB45064.1| putative protein [Arabidopsis
thaliana] gi|7269279|emb|CAB79339.1| putative protein
[Arabidopsis thaliana]
Length = 606
Score = 113 bits (282), Expect = 3e-24
Identities = 55/67 (82%), Positives = 60/67 (89%)
Frame = -1
Query: 717 SALYPGGPPVXAQSTKLLRFVDTTEMTRGPQDSPGYWVVSGARLYVEKGKISLKVKYSLK 538
SA+YPGGPPV Q+ KLL+FVDT+EMTRGPQ+SPGYWVVSGARL VEKGKISLKVKYSL
Sbjct: 532 SAIYPGGPPVPTQAPKLLKFVDTSEMTRGPQESPGYWVVSGARLLVEKGKISLKVKYSLF 591
Query: 537 TVILPDE 517
T IL DE
Sbjct: 592 TPILGDE 598
>dbj|BAB88998.1| P0401G10.6 [Oryza sativa (japonica cultivar-group)]
Length = 573
Score = 111 bits (278), Expect = 9e-24
Identities = 53/70 (75%), Positives = 61/70 (86%)
Frame = -1
Query: 717 SALYPGGPPVXAQSTKLLRFVDTTEMTRGPQDSPGYWVVSGARLYVEKGKISLKVKYSLK 538
SA+YPGGPPV Q+ KLLRFVDTTEM RGPQD PGYWVVSGA+L++E+GKISL+VKYSL
Sbjct: 499 SAVYPGGPPVPVQTPKLLRFVDTTEMLRGPQDLPGYWVVSGAKLHLERGKISLRVKYSLL 558
Query: 537 TVILPDEETS 508
TV PD+E S
Sbjct: 559 TVNSPDDEFS 568
>dbj|BAC07382.1| OJ1641_C04.15 [Oryza sativa (japonica cultivar-group)]
gi|22202779|dbj|BAC07435.1| P0039H02.26 [Oryza sativa
(japonica cultivar-group)]
Length = 601
Score = 107 bits (268), Expect = 1e-22
Identities = 49/72 (68%), Positives = 61/72 (84%)
Frame = -1
Query: 717 SALYPGGPPVXAQSTKLLRFVDTTEMTRGPQDSPGYWVVSGARLYVEKGKISLKVKYSLK 538
SA+YPGGPPV Q+ KLL+FVD TEM RGPQD PGYWVVSGA+L +E+GKISL+VKYSL
Sbjct: 526 SAVYPGGPPVPVQTPKLLKFVDPTEMMRGPQDLPGYWVVSGAKLQLERGKISLRVKYSLL 585
Query: 537 TVILPDEETSSY 502
T +LPD++ ++
Sbjct: 586 TAMLPDDDEFAF 597
>ref|NP_564307.1| expressed protein; protein id: At1g28380.1, supported by cDNA:
gi_16604598, supported by cDNA: gi_20465598 [Arabidopsis
thaliana] gi|25333976|pir||C86410 protein F3M18.18
[imported] - Arabidopsis thaliana
gi|6560762|gb|AAF16762.1|AC010155_15 F3M18.18
[Arabidopsis thaliana] gi|16604599|gb|AAL24092.1|
unknown protein [Arabidopsis thaliana]
gi|20465599|gb|AAM20282.1| unknown protein [Arabidopsis
thaliana]
Length = 612
Score = 78.6 bits (192), Expect = 8e-14
Identities = 40/66 (60%), Positives = 48/66 (72%)
Frame = -1
Query: 717 SALYPGGPPVXAQSTKLLRFVDTTEMTRGPQDSPGYWVVSGARLYVEKGKISLKVKYSLK 538
SA+YP GP + KLL VDT E+ RGP++ PGYWVV+GA+L VE GKIS+K KYSL
Sbjct: 545 SAVYPRGPSPPVKP-KLLSLVDTKEVMRGPEEQPGYWVVTGAKLCVEAGKISIKAKYSLL 603
Query: 537 TVILPD 520
TVI D
Sbjct: 604 TVISED 609
>ref|NP_172931.1| hypothetical protein; protein id: At1g14780.1, supported by cDNA:
gi_20466443 [Arabidopsis thaliana]
gi|20466444|gb|AAM20539.1| unknown protein [Arabidopsis
thaliana] gi|27311987|gb|AAO00959.1| unknown protein
[Arabidopsis thaliana]
Length = 627
Score = 75.9 bits (185), Expect = 5e-13
Identities = 32/59 (54%), Positives = 49/59 (82%)
Frame = -1
Query: 717 SALYPGGPPVXAQSTKLLRFVDTTEMTRGPQDSPGYWVVSGARLYVEKGKISLKVKYSL 541
S ++PGGPPV A + K+++FVD +++ RGPQ SPG+W+V+G RLY++KGK+ L VK++L
Sbjct: 560 SGVFPGGPPVPANN-KIVKFVDLSQLCRGPQHSPGHWLVTGVRLYLDKGKLCLHVKFAL 617
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,798,526
Number of Sequences: 1393205
Number of extensions: 13582802
Number of successful extensions: 27504
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 26505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27486
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
