Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001226A_C01 KMC001226A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_491026.1| Putative protein, nematode specific [Caenorhabd... 34 1.2
gb|AAL30838.1|AF440399_2 mating type 1-1 protein [Mycosphaerella... 33 1.6
ref|NP_704053.1| cell division cycle ATPase, putative [Plasmodiu... 32 5.9
ref|NP_579943.1| dynein, axonemal, heavy chain 5; dynein, axon, ... 31 7.7
dbj|BAB61252.1| P0439E11.1 [Oryza sativa (japonica cultivar-grou... 31 7.7
>ref|NP_491026.1| Putative protein, nematode specific [Caenorhabditis elegans]
gi|7500316|pir||T29875 hypothetical protein F32B5.2 -
Caenorhabditis elegans gi|2088781|gb|AAB54207.1|
Hypothetical protein F32B5.2 [Caenorhabditis elegans]
Length = 380
Score = 33.9 bits (76), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 332 HPGALVAQFPSRHWYQREFNNQKRVSTASNGQSGMQWSLD 451
+P + +F S WYQ E+ + R T NG+ G W+ D
Sbjct: 194 YPEYVACKFTSNEWYQIEWKSTIRYETFRNGEYGTYWAND 233
>gb|AAL30838.1|AF440399_2 mating type 1-1 protein [Mycosphaerella graminicola]
Length = 296
Score = 33.5 bits (75), Expect = 1.6
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +1
Query: 91 P*ISHFHHNNTNLRSTQD-----SSQRRKVHTTHLTQSERDEAKDLIKSVSS 231
P + HFHH T +T D S+Q ++ T TQ +RD+ ++++ ++S
Sbjct: 7 PLLPHFHHTQTIGATTVDMAAAVSAQEMALYLTGCTQEQRDQFNEMLQQINS 58
>ref|NP_704053.1| cell division cycle ATPase, putative [Plasmodium falciparum 3D7]
gi|23498791|emb|CAD50861.1| cell division cycle ATPase,
putative [Plasmodium falciparum 3D7]
Length = 1229
Score = 31.6 bits (70), Expect = 5.9
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +1
Query: 79 FQSRP*ISHFHHNNTNLRS---TQDSSQRRKVHTTHLTQSERDEAKDLIKSVSSYF*YNI 249
F+ R I++ ++NN N T D+ K HT ++ + E ++ D IK++++ +
Sbjct: 177 FKEREKITNSYNNNNNNNKVIVTHDN----KNHTNYINKVENKQSDDKIKNLNNKYIKKF 232
Query: 250 QSHIFKRYQLG 282
+SHI + LG
Sbjct: 233 KSHILQNDILG 243
>ref|NP_579943.1| dynein, axonemal, heavy chain 5; dynein, axon, heavy chain 5;
axonemal dynein heavy chain 5 [Mus musculus]
gi|18449111|gb|AAL69993.1|AF466704_1 axonemal dynein
heavy chain 5 [Mus musculus]
Length = 4621
Score = 31.2 bits (69), Expect = 7.7
Identities = 15/42 (35%), Positives = 30/42 (70%), Gaps = 4/42 (9%)
Frame = +1
Query: 67 TELTFQSRP*ISHFHHNNTN--LRSTQDSSQ--RRKVHTTHL 180
TE+ ++R +SHF+H NT+ L+ T+++ + RR++H +H+
Sbjct: 946 TEVLEEARELLSHFNHQNTDALLKVTRNTLEAIRRRIHFSHM 987
>dbj|BAB61252.1| P0439E11.1 [Oryza sativa (japonica cultivar-group)]
gi|21104604|dbj|BAB93197.1| P0031D02.26 [Oryza sativa
(japonica cultivar-group)]
Length = 679
Score = 31.2 bits (69), Expect = 7.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 259 IFKRYQLGFMWRQAGHQIEI*FISPSWCFGGPISISALVPERIQ 390
IF+R LG +WR++ +++ +S W F S +A PE+ +
Sbjct: 593 IFRRIALGHVWRRSAASVQVSSLSSRWLF----SSAATAPEKAE 632
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,299,903
Number of Sequences: 1393205
Number of extensions: 10410500
Number of successful extensions: 32952
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 32224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32937
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
