Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001225A_C02 KMC001225A_c02
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_628759.1| putative two-component system sensor kinase [St... 32 5.0
gb|AAH48895.1| Similar to N-acylaminoacyl-peptide hydrolase [Dan... 32 8.6
>ref|NP_628759.1| putative two-component system sensor kinase [Streptomyces
coelicolor A3(2)] gi|10129742|emb|CAC08298.1| putative
two-component system sensor kinase [Streptomyces
coelicolor A3(2)]
Length = 455
Score = 32.3 bits (72), Expect = 5.0
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = -1
Query: 524 VNLYCFTFTLQLVPCLFTVFPLYAGEEG----QDQDHHLF 417
VN++ F + + P F VFP+YAG++G D+ H ++
Sbjct: 155 VNVWAFGWAMLTYPLWFWVFPMYAGQDGLQLYGDETHRVY 194
>gb|AAH48895.1| Similar to N-acylaminoacyl-peptide hydrolase [Danio rerio]
Length = 737
Score = 31.6 bits (70), Expect = 8.6
Identities = 18/79 (22%), Positives = 38/79 (47%)
Frame = +3
Query: 15 DIPIYELSVGSMILMGFKHMPESNEDKAIKVSDFRYG*FLHQNILQQYPILPGFYTICLL 194
D+ + +V S++ G +++ + V +G FL +++ QYP GFY C+
Sbjct: 564 DVKDVQFAVDSVLKQG------GFDEQKVAVIGGSHGGFLACHLIGQYP---GFYKACVA 614
Query: 195 RTPAYQQSNYITMLNLQNW 251
R P ++ + ++ +W
Sbjct: 615 RNPVTNLASMVCCTDIPDW 633
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,250,141
Number of Sequences: 1393205
Number of extensions: 10949215
Number of successful extensions: 23179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23178
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
