Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001224A_C01 KMC001224A_c01
(499 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL38271.1| unknown protein [Arabidopsis thaliana] gi|2213612... 37 0.094
ref|NP_567816.1| Expressed protein; protein id: At4g28706.1, sup... 37 0.094
ref|NP_050068.1| NH2 terminus uncertain [Leishmania tarentolae] ... 37 0.16
gb|AAD28358.1|AF079967_2 MURF1 [Phytomonas serpens] 36 0.27
pir||E22845 hypothetical protein 4 - Trypanosoma brucei mitochon... 36 0.27
>gb|AAL38271.1| unknown protein [Arabidopsis thaliana] gi|22136124|gb|AAM91140.1|
unknown protein [Arabidopsis thaliana]
Length = 404
Score = 37.4 bits (85), Expect = 0.094
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 496 KMLPFASYVVASTCTDLGTKAGLPYCSNPYLASF 395
KMLPFA+ V +C LG + GLP+ ++P L F
Sbjct: 369 KMLPFAAQVAGCSCRALGARTGLPHRTDPRLVPF 402
>ref|NP_567816.1| Expressed protein; protein id: At4g28706.1, supported by cDNA:
gi_16226360 [Arabidopsis thaliana]
gi|16226361|gb|AAL16146.1|AF428378_1 unknown protein
[Arabidopsis thaliana] gi|21928053|gb|AAM78055.1|
At4g29227 [Arabidopsis thaliana]
Length = 401
Score = 37.4 bits (85), Expect = 0.094
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 496 KMLPFASYVVASTCTDLGTKAGLPYCSNPYLASF 395
KMLPFA+ V +C LG + GLP+ ++P L F
Sbjct: 366 KMLPFAAQVAGCSCRALGARTGLPHRTDPRLVPF 399
>ref|NP_050068.1| NH2 terminus uncertain [Leishmania tarentolae] gi|83996|pir||B26696
hypothetical protein 1 (CYb-COII intergenic region) -
Leishmania tarentolae mitochondrion (fragment)
gi|896286|gb|AAA96601.1| NH2 terminus uncertain
Length = 443
Score = 36.6 bits (83), Expect = 0.16
Identities = 17/45 (37%), Positives = 29/45 (63%)
Frame = +3
Query: 237 LLTIFLSY*LLLTIFLSSLYYK*FLHIFLYMLTIFLLY*LLKILM 371
LL +F Y +L +FL LY + + IF+YMLT ++L+ + I++
Sbjct: 180 LLILFKLYIAILILFLEQLYIRLGVFIFIYMLTFYVLFCFILIIL 224
>gb|AAD28358.1|AF079967_2 MURF1 [Phytomonas serpens]
Length = 441
Score = 35.8 bits (81), Expect = 0.27
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +3
Query: 189 DFKMIVNMLSAISIQCLLTIFLS----Y*LLLTIFLSSLYYK*FLHIFLYMLTIFLLY*L 356
DF ++ + I CL+ IFL Y LL ++ LY + + IF+YMLT ++L+
Sbjct: 158 DFCFLIFDEEWLGILCLMYIFLITLKLYTSLLITYMEQLYIRLGIFIFIYMLTFYVLFCF 217
Query: 357 LKILM 371
+ I++
Sbjct: 218 ILIII 222
>pir||E22845 hypothetical protein 4 - Trypanosoma brucei mitochondrion
Length = 445
Score = 35.8 bits (81), Expect = 0.27
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +3
Query: 189 DFKMIVNMLSAISIQCL----LTIFLSY*LLLTIFLSSLYYK*FLHIFLYMLTIFLLY*L 356
DF +V + I CL L +F Y L +F+ LY + + IF+YMLT ++L+
Sbjct: 162 DFCFLVFDEEWLGILCLFYTLLILFKLYIAFLILFMEQLYIRLGVFIFIYMLTFYILFCF 221
Query: 357 LKILM 371
+ I++
Sbjct: 222 ILIIL 226
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,417,704
Number of Sequences: 1393205
Number of extensions: 7609870
Number of successful extensions: 18321
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18313
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
