Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001222A_C01 KMC001222A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06461 DNA-binding protein PD3, chloroplast - garden pea gi... 131 7e-30
gb|AAN13035.1| unknown protein [Arabidopsis thaliana] 129 2e-29
ref|NP_193874.1| putative protein; protein id: At4g21430.1 [Arab... 129 2e-29
pir||T10955 early nodulin binding protein 1 - spring vetch gi|13... 129 2e-29
ref|NP_192008.2| putative protein (fragment); protein id: At4g00... 129 4e-29
>pir||T06461 DNA-binding protein PD3, chloroplast - garden pea
gi|2213540|emb|CAA67296.1| chloroplast DNA-binding
protein PD3 [Pisum sativum]
Length = 1629
Score = 131 bits (329), Expect = 7e-30
Identities = 59/94 (62%), Positives = 76/94 (80%)
Frame = -2
Query: 587 RLKEEFEIEPWTFEQHAGEAVIIPAGCPYQMRNPKSCVHVVLEFVSPENVTESIQLIDEV 408
+LK E+ +EPWTFEQH GEAV IPAGCP+Q+RN KSC+ V ++FVSPENV E +QL +E
Sbjct: 1532 QLKLEYGVEPWTFEQHLGEAVFIPAGCPHQVRNRKSCIKVAMDFVSPENVQECVQLTEEF 1591
Query: 407 RLLPKDHKAKVDKLEMKKMALHSMSTAIEEIREL 306
RLLPK+H++K DKLE+KKMAL++ A+ E EL
Sbjct: 1592 RLLPKNHRSKEDKLEIKKMALYAADVAVAEANEL 1625
>gb|AAN13035.1| unknown protein [Arabidopsis thaliana]
Length = 927
Score = 129 bits (325), Expect = 2e-29
Identities = 58/95 (61%), Positives = 81/95 (85%)
Frame = -2
Query: 587 RLKEEFEIEPWTFEQHAGEAVIIPAGCPYQMRNPKSCVHVVLEFVSPENVTESIQLIDEV 408
RLKEEF++EPW+F+Q GEAVI+PAGCPYQ+R KSCV+ VL+F+SPE+V+ESI+ + E+
Sbjct: 821 RLKEEFDVEPWSFDQCVGEAVILPAGCPYQIRKNKSCVNAVLKFLSPEHVSESIKRVKEL 880
Query: 407 RLLPKDHKAKVDKLEMKKMALHSMSTAIEEIRELT 303
LP+ K+K +K+E+KKMA+H +S A++EIRELT
Sbjct: 881 NQLPQSVKSKANKIEVKKMAIHKISEAVKEIRELT 915
>ref|NP_193874.1| putative protein; protein id: At4g21430.1 [Arabidopsis thaliana]
gi|7485720|pir||T05151 hypothetical protein F18E5.50 -
Arabidopsis thaliana gi|3402746|emb|CAA18707.1| putative
protein [Arabidopsis thaliana]
gi|3402762|emb|CAA20208.1| putative protein [Arabidopsis
thaliana] gi|7268940|emb|CAB81250.1| putative protein
[Arabidopsis thaliana]
Length = 728
Score = 129 bits (325), Expect = 2e-29
Identities = 58/95 (61%), Positives = 81/95 (85%)
Frame = -2
Query: 587 RLKEEFEIEPWTFEQHAGEAVIIPAGCPYQMRNPKSCVHVVLEFVSPENVTESIQLIDEV 408
RLKEEF++EPW+F+Q GEAVI+PAGCPYQ+R KSCV+ VL+F+SPE+V+ESI+ + E+
Sbjct: 622 RLKEEFDVEPWSFDQCVGEAVILPAGCPYQIRKNKSCVNAVLKFLSPEHVSESIKRVKEL 681
Query: 407 RLLPKDHKAKVDKLEMKKMALHSMSTAIEEIRELT 303
LP+ K+K +K+E+KKMA+H +S A++EIRELT
Sbjct: 682 NQLPQSVKSKANKIEVKKMAIHKISEAVKEIRELT 716
>pir||T10955 early nodulin binding protein 1 - spring vetch
gi|1360637|emb|CAA65242.1| ENBP1 [Vicia sativa]
Length = 1641
Score = 129 bits (325), Expect = 2e-29
Identities = 58/94 (61%), Positives = 76/94 (80%)
Frame = -2
Query: 587 RLKEEFEIEPWTFEQHAGEAVIIPAGCPYQMRNPKSCVHVVLEFVSPENVTESIQLIDEV 408
+LK E+ +EPWTFEQH GEAV IPAGCP+Q+RN KSC+ V ++FVSPENV E +QL +E
Sbjct: 1544 QLKIEYGVEPWTFEQHLGEAVFIPAGCPHQVRNRKSCIKVAMDFVSPENVRECVQLTEEF 1603
Query: 407 RLLPKDHKAKVDKLEMKKMALHSMSTAIEEIREL 306
RLLPK+H++K DKLE+KKMAL++ A+ E +L
Sbjct: 1604 RLLPKNHRSKEDKLEIKKMALYAADVAVAEANKL 1637
>ref|NP_192008.2| putative protein (fragment); protein id: At4g00990.1, supported by
cDNA: gi_18176334 [Arabidopsis thaliana]
Length = 454
Score = 129 bits (323), Expect = 4e-29
Identities = 58/94 (61%), Positives = 77/94 (81%)
Frame = -2
Query: 587 RLKEEFEIEPWTFEQHAGEAVIIPAGCPYQMRNPKSCVHVVLEFVSPENVTESIQLIDEV 408
+LKEEF+IEPWTFEQH GEAV IPAGCP+Q+RN +SC+ V L+FV+PE+V E ++L E
Sbjct: 352 QLKEEFDIEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVAPESVEECLRLTQEF 411
Query: 407 RLLPKDHKAKVDKLEMKKMALHSMSTAIEEIREL 306
R LPKDH + DKLE+KK+AL++ S+AI E++ L
Sbjct: 412 RRLPKDHSSSEDKLELKKIALYAASSAIREVKGL 445
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,686,867
Number of Sequences: 1393205
Number of extensions: 10369762
Number of successful extensions: 30688
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 29516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30682
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
