Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001218A_C01 KMC001218A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_703431.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.5
gb|EAA18678.1| hypothetical protein [Plasmodium yoelii yoelii] 33 2.0
gb|AAG41244.1|AF210626_2 Cdc24 [Eremothecium gossypii] 32 4.5
ref|NP_702127.1| hypothetical protein [Plasmodium falciparum 3D7... 32 4.5
emb|CAC28789.2| hypothetical protein [Neurospora crassa] gi|2892... 32 4.5
>ref|NP_703431.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504572|emb|CAD51451.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 262
Score = 33.5 bits (75), Expect = 1.5
Identities = 18/48 (37%), Positives = 26/48 (53%)
Frame = -2
Query: 473 SEPNTDNNSSQGSTSHPEENKPSKSSSTFRKKLAVFSKSISHASKTQK 330
S+ N+D+NS S SH + N S S +++KK K H SK +K
Sbjct: 146 SDSNSDSNSDSNSNSHSDSNSNSHSDYSYKKK-----KHSHHHSKYKK 188
>gb|EAA18678.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1173
Score = 33.1 bits (74), Expect = 2.0
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -2
Query: 518 LNLLRDVKCVENEDCSEPNTDNNSSQGSTSHPEENKPSKSSSTFRKKLAVFSKSISHASK 339
LN+L+ K + N+D S N +NN+S + ++ + N S + + ++I+ +
Sbjct: 761 LNILKKKKIITNQDTSNENKNNNTSSNNNTNEDNNNISSGARIIKLNQKDMKENINSNTS 820
Query: 338 T 336
T
Sbjct: 821 T 821
>gb|AAG41244.1|AF210626_2 Cdc24 [Eremothecium gossypii]
Length = 761
Score = 32.0 bits (71), Expect = 4.5
Identities = 17/58 (29%), Positives = 28/58 (47%)
Frame = -2
Query: 521 LLNLLRDVKCVENEDCSEPNTDNNSSQGSTSHPEENKPSKSSSTFRKKLAVFSKSISH 348
L NLLR ++ + + +TD +S HP + S +SS R+ V K ++H
Sbjct: 600 LQNLLRQIRSESYKSTATGSTDRSSFSSPYGHPHYSAASINSSAVRQISEVMPKQLNH 657
>ref|NP_702127.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497306|gb|AAN36851.1|AE014820_1 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 966
Score = 32.0 bits (71), Expect = 4.5
Identities = 15/47 (31%), Positives = 25/47 (52%)
Frame = -2
Query: 488 ENEDCSEPNTDNNSSQGSTSHPEENKPSKSSSTFRKKLAVFSKSISH 348
+NED S+ N DNN++ S+ H N S S K+L + + + +
Sbjct: 67 DNEDYSDDNNDNNNNY-SSDHNNNNNNSSSDHNNNKRLVLLKEKLKY 112
>emb|CAC28789.2| hypothetical protein [Neurospora crassa] gi|28922950|gb|EAA32169.1|
hypothetical protein [Neurospora crassa]
Length = 621
Score = 32.0 bits (71), Expect = 4.5
Identities = 18/41 (43%), Positives = 22/41 (52%), Gaps = 3/41 (7%)
Frame = -2
Query: 506 RDVKCVENEDCSEPNTDNNSSQGSTS---HPEENKPSKSSS 393
++ K +N D S P+T NSS S S P N SKSSS
Sbjct: 447 QNFKATDNSDASSPSTPTNSSSPSPSGSKDPSSNTGSKSSS 487
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,052,808
Number of Sequences: 1393205
Number of extensions: 8661943
Number of successful extensions: 30310
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 27914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30139
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
