Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001215A_C01 KMC001215A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_701299.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.4
dbj|BAB84905.1| FLJ00150 protein [Homo sapiens] 31 7.6
>ref|NP_701299.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496366|gb|AAN36023.1|AE014842_45 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 861
Score = 32.3 bits (72), Expect = 3.4
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = +2
Query: 134 LTSFLHKKLENSHFRMELSNTQQDKDIQHKEYELLQGMKTVASAPNLFLLKSYNLFLVCR 313
+ S++HK +EN + L+N Q+ +++K + + + + + L + YN+ L
Sbjct: 128 IKSYIHKHMENKIYFKTLTNIIQNFALKNKNFVTIFLVHHIKNKIKLHFIHFYNVILYQY 187
Query: 314 RNPSNACFRHQT---SNPTT*ANKLQLKIIINMLQMLTCPKLA 433
N C +H + SN +NKL L+ I + ++L KL+
Sbjct: 188 NNVKEKC-KHISILQSNNHFISNKLYLQNIHILNKILALFKLS 229
>dbj|BAB84905.1| FLJ00150 protein [Homo sapiens]
Length = 1793
Score = 31.2 bits (69), Expect = 7.6
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 104 QKFISPMRQALTSFLHKKLENSHFRMELSNTQQDKDIQHKEYELLQ 241
QK I ++ A+ S K ++SH + + S +Q DI +K+Y+ L+
Sbjct: 4 QKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLE 49
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,430,021
Number of Sequences: 1393205
Number of extensions: 8352134
Number of successful extensions: 21559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21551
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
