Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001214A_C01 KMC001214A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_571063.1| patched1 [Danio rerio] gi|6225889|sp|Q98864|PTC... 38 0.063
gb|EAA16755.1| chloroquine resistance marker protein [Plasmodium... 33 2.7
gb|AAK97655.1|AF409095_1 patched 2 [Gallus gallus] 32 5.9
ref|NP_510353.1| Putative protein family member, nematode specif... 31 7.7
>ref|NP_571063.1| patched1 [Danio rerio] gi|6225889|sp|Q98864|PTC1_BRARE PATCHED
PROTEIN HOMOLOG 1 (PATCHED 1) (PTC1)
gi|7512122|pir||T18291 patched protein - zebra fish
gi|1524010|emb|CAA67386.1| patched protein [Danio rerio]
Length = 1220
Score = 38.1 bits (87), Expect = 0.063
Identities = 23/66 (34%), Positives = 34/66 (50%), Gaps = 9/66 (13%)
Frame = -3
Query: 356 YFGSFRLYIVYILGF---RFNIQLQDIH-----CKYTAEGCNHLLSRIWEHISRSWLR-L 204
YF + +Y+V + GF R QL +H KY + NH L R+W H + WL+ L
Sbjct: 786 YFSFYNMYLVTMDGFDYARSQRQLLQLHNAFNSVKYVVKDGNHKLPRMWLHYFQDWLKGL 845
Query: 203 KITYQA 186
+ T+ A
Sbjct: 846 QATFDA 851
>gb|EAA16755.1| chloroquine resistance marker protein [Plasmodium yoelii yoelii]
Length = 950
Score = 32.7 bits (73), Expect = 2.7
Identities = 18/52 (34%), Positives = 26/52 (49%)
Frame = -1
Query: 313 LGSTFNSKTFIASTLQKAATTSYPVFGNTLAGHGYVSKSHIKRSYKLYHPLF 158
+ + +NS I + L+K T S ++ NTL + Y KR Y YH LF
Sbjct: 619 INTLYNSNNEIKTLLKKLITASKGIYNNTLNFYVYT-----KRIYNFYHKLF 665
>gb|AAK97655.1|AF409095_1 patched 2 [Gallus gallus]
Length = 913
Score = 31.6 bits (70), Expect = 5.9
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Frame = -3
Query: 356 YFGSFRLYIVYILGFRF---NIQLQDIH-----CKYTAEGCNHLLSRIWEHISRSWLR-L 204
YF + ++IV GF + L +H KY NH L ++W H + WLR L
Sbjct: 747 YFSFYNMFIVTKGGFHYPGAQAALLSLHQAFSTVKYVVREGNHDLPKMWLHYFQDWLRGL 806
Query: 203 KITYQAKLQ 177
+ T+ Q
Sbjct: 807 QATFDRDWQ 815
>ref|NP_510353.1| Putative protein family member, nematode specific [Caenorhabditis
elegans] gi|7500113|pir||T21521 hypothetical protein
F28H6.6 - Caenorhabditis elegans
gi|3876528|emb|CAA20935.1| Hypothetical protein F28H6.6
[Caenorhabditis elegans]
Length = 722
Score = 31.2 bits (69), Expect = 7.7
Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 5/77 (6%)
Frame = -3
Query: 299 QLQDIHCKYTAEGCNHLLSRIWEHISRSWLRLKITYQAKLQ---VVPS--AIFSSTLLLF 135
+L+D H K AE CN + S I +W + +A LQ V+ + IF++ +L+F
Sbjct: 256 KLEDQHVKCLAEQCNVVPSMI-----ETWFAERSEQEAHLQKGIVIKNLFEIFNNIILMF 310
Query: 134 NYQINCCVYQFTQLLRE 84
++QI V + + E
Sbjct: 311 SFQIKAWVTDYNFKIEE 327
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,623,965
Number of Sequences: 1393205
Number of extensions: 7894285
Number of successful extensions: 17455
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17447
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
