Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001213A_C01 KMC001213A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181760.1| unknown protein; protein id: At2g42310.1, suppo... 147 6e-35
pir||T06741 hypothetical protein F15B8.20 - Arabidopsis thaliana... 147 8e-35
ref|NP_567054.1| Expressed protein; protein id: At3g57785.1, sup... 147 8e-35
gb|AAG01124.1|AF273333_9 BAC19.9 [Lycopersicon esculentum] 144 9e-34
gb|AAO72407.1| hypothetical protein [Oryza sativa (japonica cult... 75 5e-13
>ref|NP_181760.1| unknown protein; protein id: At2g42310.1, supported by cDNA:
gi_18176257, supported by cDNA: gi_20465314 [Arabidopsis
thaliana] gi|25408787|pir||D84852 hypothetical protein
At2g42310 [imported] - Arabidopsis thaliana
gi|4567303|gb|AAD23714.1| unknown protein [Arabidopsis
thaliana] gi|18176258|gb|AAL60012.1| unknown protein
[Arabidopsis thaliana] gi|20465315|gb|AAM20061.1|
unknown protein [Arabidopsis thaliana]
Length = 114
Score = 147 bits (372), Expect = 6e-35
Identities = 74/106 (69%), Positives = 84/106 (78%), Gaps = 2/106 (1%)
Frame = -1
Query: 552 LRRRLFPSLRTRGGGSSS--SRWTSAGHEEHPKGLPFNRTPPPPGESRKWEDWELPCYIT 379
LR R+F +R G +S+ SRW + GHEE PKG NRTPP PG+SRKWEDWELPCYIT
Sbjct: 14 LRNRIF----SRSGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSRKWEDWELPCYIT 69
Query: 378 SFLTIVILGVGLNAKPDLTIETWAHEKALERLRMESSLAANSDSAE 241
SFLTIVILGVGLNAKPDL+IETWAH+KALERL ME LA DS++
Sbjct: 70 SFLTIVILGVGLNAKPDLSIETWAHQKALERLEME-KLATAGDSSD 114
>pir||T06741 hypothetical protein F15B8.20 - Arabidopsis thaliana
gi|4678268|emb|CAB41176.1| putative protein [Arabidopsis
thaliana]
Length = 614
Score = 147 bits (371), Expect = 8e-35
Identities = 69/93 (74%), Positives = 76/93 (81%), Gaps = 2/93 (2%)
Frame = -1
Query: 519 RGGGSSS--SRWTSAGHEEHPKGLPFNRTPPPPGESRKWEDWELPCYITSFLTIVILGVG 346
R G +S+ SRW + GHEE PKG NRTPPPPG+SRKWEDWELPCYITSFLTIVILGVG
Sbjct: 521 RSGSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSRKWEDWELPCYITSFLTIVILGVG 580
Query: 345 LNAKPDLTIETWAHEKALERLRMESSLAANSDS 247
LNAKPDL+IETWAH+KALERL ME +A S
Sbjct: 581 LNAKPDLSIETWAHQKALERLEMEKLASAGDSS 613
>ref|NP_567054.1| Expressed protein; protein id: At3g57785.1, supported by cDNA:
22956. [Arabidopsis thaliana] gi|21592369|gb|AAM64320.1|
unknown [Arabidopsis thaliana]
gi|22531245|gb|AAM97126.1| expressed protein
[Arabidopsis thaliana] gi|24899847|gb|AAN65138.1|
expressed protein [Arabidopsis thaliana]
Length = 114
Score = 147 bits (371), Expect = 8e-35
Identities = 69/93 (74%), Positives = 76/93 (81%), Gaps = 2/93 (2%)
Frame = -1
Query: 519 RGGGSSS--SRWTSAGHEEHPKGLPFNRTPPPPGESRKWEDWELPCYITSFLTIVILGVG 346
R G +S+ SRW + GHEE PKG NRTPPPPG+SRKWEDWELPCYITSFLTIVILGVG
Sbjct: 21 RSGSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSRKWEDWELPCYITSFLTIVILGVG 80
Query: 345 LNAKPDLTIETWAHEKALERLRMESSLAANSDS 247
LNAKPDL+IETWAH+KALERL ME +A S
Sbjct: 81 LNAKPDLSIETWAHQKALERLEMEKLASAGDSS 113
>gb|AAG01124.1|AF273333_9 BAC19.9 [Lycopersicon esculentum]
Length = 353
Score = 144 bits (362), Expect = 9e-34
Identities = 66/95 (69%), Positives = 79/95 (82%)
Frame = -1
Query: 552 LRRRLFPSLRTRGGGSSSSRWTSAGHEEHPKGLPFNRTPPPPGESRKWEDWELPCYITSF 373
LR R+ LRTRGG + +T+AGH++ P G FNR PPPPG+SRKWEDWELPCYITSF
Sbjct: 257 LRARVSSGLRTRGGHGPNP-FTTAGHQDRPNGYLFNRVPPPPGQSRKWEDWELPCYITSF 315
Query: 372 LTIVILGVGLNAKPDLTIETWAHEKALERLRMESS 268
TIVILGVGLNAKPDLT+ETWAH++AL+RL +ES+
Sbjct: 316 FTIVILGVGLNAKPDLTLETWAHQEALKRLELESA 350
>gb|AAO72407.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 267
Score = 75.1 bits (183), Expect = 5e-13
Identities = 32/51 (62%), Positives = 39/51 (75%)
Frame = -1
Query: 450 FNRTPPPPGESRKWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHEK 298
F R P GE KW DWELPCY+TSFLT+VILG+ LNAKP+ T++T H+K
Sbjct: 188 FKRPSPSAGEFCKWVDWELPCYLTSFLTVVILGIRLNAKPNFTLQTRPHQK 238
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,122,544
Number of Sequences: 1393205
Number of extensions: 11733531
Number of successful extensions: 40420
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 37644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40353
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
