Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001211A_C01 KMC001211A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180645.2| unknown protein; protein id: At2g30880.1, suppo... 102 3e-21
pir||G84713 hypothetical protein At2g30880 [imported] - Arabidop... 102 3e-21
ref|NP_571663.1| odorant receptor, family 13, member 1; odorant ... 36 0.38
gb|AAB38872.1| odorant receptor 8 [Danio rerio] 36 0.38
ref|NP_055837.1| PDZ domain containing 3; KIAA0300 protein; like... 33 3.2
>ref|NP_180645.2| unknown protein; protein id: At2g30880.1, supported by cDNA:
gi_17979457 [Arabidopsis thaliana]
gi|17979458|gb|AAL50066.1| At2g30880/F7F1.9 [Arabidopsis
thaliana] gi|23506089|gb|AAN28904.1| At2g30880/F7F1.9
[Arabidopsis thaliana]
Length = 504
Score = 102 bits (255), Expect = 3e-21
Identities = 59/114 (51%), Positives = 79/114 (68%), Gaps = 9/114 (7%)
Frame = -1
Query: 567 QVFEKKESCSDTKHVDP----TEENVDKACLSVSRAIPAPAENVVHMATDQV-NIQP-VG 406
QV E+K ++ + P TE+NVDKACLS+SR P ENVVHM+ +QV N QP VG
Sbjct: 388 QVCEEKTESTNGEASLPMTKETEKNVDKACLSISRTASIPGENVVHMSEEQVVNAQPPVG 447
Query: 405 DNEWSDIQATEARIADVREVAAETD---GNSTDIPVISQPGTNHQHEQGANSFH 253
+NEW+DIQATEAR++DVRE++AET+ NS DIPV+S +++ + SFH
Sbjct: 448 ENEWNDIQATEARVSDVREISAETERDRRNSLDIPVVSPEPNVPRNDPPSESFH 501
>pir||G84713 hypothetical protein At2g30880 [imported] - Arabidopsis thaliana
gi|3201615|gb|AAC20722.1| unknown protein [Arabidopsis
thaliana]
Length = 534
Score = 102 bits (255), Expect = 3e-21
Identities = 59/114 (51%), Positives = 79/114 (68%), Gaps = 9/114 (7%)
Frame = -1
Query: 567 QVFEKKESCSDTKHVDP----TEENVDKACLSVSRAIPAPAENVVHMATDQV-NIQP-VG 406
QV E+K ++ + P TE+NVDKACLS+SR P ENVVHM+ +QV N QP VG
Sbjct: 418 QVCEEKTESTNGEASLPMTKETEKNVDKACLSISRTASIPGENVVHMSEEQVVNAQPPVG 477
Query: 405 DNEWSDIQATEARIADVREVAAETD---GNSTDIPVISQPGTNHQHEQGANSFH 253
+NEW+DIQATEAR++DVRE++AET+ NS DIPV+S +++ + SFH
Sbjct: 478 ENEWNDIQATEARVSDVREISAETERDRRNSLDIPVVSPEPNVPRNDPPSESFH 531
>ref|NP_571663.1| odorant receptor, family 13, member 1; odorant receptor 8;
olfactory receptor protein 13; olfactory receptor
protein 13.1 [Danio rerio] gi|2331259|gb|AAC60253.1|
olfactory receptor protein 13.1 [Danio rerio]
gi|2353703|gb|AAC60262.1| olfactory receptor protein
13.1 [Danio rerio] gi|6739477|gb|AAF27264.1| odorant
receptor 13.1 [Danio rerio]
Length = 328
Score = 35.8 bits (81), Expect = 0.38
Identities = 19/62 (30%), Positives = 30/62 (47%)
Frame = +1
Query: 223 VVYVLLTSWLMERVCSLFMLMIGTWLANHRNVCAVSISFGCYFPYISYSGLRCLNITPFV 402
+ Y+ L SW++ V L M++ L CA + CY +IS + L C N P+
Sbjct: 142 IFYLCLISWVIANVTPLMMVIRAYPLP----YCAENTIIQCYCDHISITSLACTNRAPYS 197
Query: 403 VP 408
+P
Sbjct: 198 IP 199
>gb|AAB38872.1| odorant receptor 8 [Danio rerio]
Length = 159
Score = 35.8 bits (81), Expect = 0.38
Identities = 19/62 (30%), Positives = 30/62 (47%)
Frame = +1
Query: 223 VVYVLLTSWLMERVCSLFMLMIGTWLANHRNVCAVSISFGCYFPYISYSGLRCLNITPFV 402
+ Y+ L SW++ V L M++ L CA + CY +IS + L C N P+
Sbjct: 14 IFYLCLISWVIANVTPLMMVIRAYPLP----YCAENTIIQCYCDHISITSLACTNRAPYS 69
Query: 403 VP 408
+P
Sbjct: 70 IP 71
>ref|NP_055837.1| PDZ domain containing 3; KIAA0300 protein; likely ortholog of rat
plakophilin-related armadillo repeat protein-interacting
PDZ protein; PDZ domain containing 2 [Homo sapiens]
gi|12751452|gb|AAK07661.1|AF338650_1 PDZ
domain-containing protein AIPC [Homo sapiens]
Length = 2641
Score = 32.7 bits (73), Expect = 3.2
Identities = 32/116 (27%), Positives = 49/116 (41%), Gaps = 10/116 (8%)
Frame = -1
Query: 522 DPTEENVDKACLSVSRAIPAPAENVVHMATDQVNIQPVGDNEWSDIQAT-EARIADVREV 346
DP+E ++ + +R P P + H+ T Q I P S +T +A RE
Sbjct: 1392 DPSESEEEQIEICSTRGCPNPPSSPAHLPT-QAAICPASAKVLSLKYSTPRESVASPREK 1450
Query: 345 AAETDGNSTDIPVISQPG-----TNHQHEQGA----NSFHQP*C*QNVYNIEKFSS 205
AA G+ T P SQP ++ +HE A + H+P C + + SS
Sbjct: 1451 AACLPGSYTSGPDSSQPSSLLEMSSQEHETHADISTSQNHRPSCAEETTEVTSASS 1506
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,125,207
Number of Sequences: 1393205
Number of extensions: 10008908
Number of successful extensions: 23745
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 23102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23727
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
