Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001208A_C01 KMC001208A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189306.1| glycosyl hydrolase family 38 (alpha-mannosidase... 130 1e-29
ref|NP_196902.2| glycosyl hydrolase family 38 (alpha-mannosidase... 123 2e-27
dbj|BAB11126.1| alpha-mannosidase [Arabidopsis thaliana] 123 2e-27
ref|NP_201416.1| glycosyl hydrolase family 38 (alpha-mannosidase... 120 1e-26
gb|AAL73069.1|AC090873_15 Putative alpha-mannosidase [Oryza sati... 102 2e-21
>ref|NP_189306.1| glycosyl hydrolase family 38 (alpha-mannosidase); protein id:
At3g26720.1, supported by cDNA: gi_14517402 [Arabidopsis
thaliana] gi|1888357|emb|CAA66821.1| alpha-mannosidase
[Arabidopsis thaliana] gi|1890154|emb|CAA72432.1|
alpha-mannosidase precursor [Arabidopsis thaliana]
gi|11994305|dbj|BAB01735.1| alpha-mannosidase
[Arabidopsis thaliana] gi|14517403|gb|AAK62592.1|
AT3g26720/MLJ15_12 [Arabidopsis thaliana]
gi|21360397|gb|AAM47314.1| AT3g26720/MLJ15_12
[Arabidopsis thaliana]
Length = 1019
Score = 130 bits (327), Expect = 1e-29
Identities = 69/99 (69%), Positives = 77/99 (77%)
Frame = -3
Query: 551 NAKVLLRLAHLYELGEDKEYSVKASVELKKLFPNKKISKVTEMSLSANQERTEMEKKKLA 372
N +VLLRLAHL+E+GED EYSV A VELKKLF NKKI +V E SLS NQE+ EMEK++L
Sbjct: 906 NGEVLLRLAHLFEVGEDSEYSVMAKVELKKLFHNKKIREVKETSLSGNQEKAEMEKRRLI 965
Query: 371 WKVEGSTGEPKVVRGGPVDPTKLVVELAPMEIRTFFIDF 255
WKVEGS GE +V RG VD KLVVEL PMEIRT I F
Sbjct: 966 WKVEGSAGE-EVKRGEAVDAEKLVVELVPMEIRTLLIKF 1003
>ref|NP_196902.2| glycosyl hydrolase family 38 (alpha-mannosidase); protein id:
At5g13980.1, supported by cDNA: gi_20466475 [Arabidopsis
thaliana] gi|20466476|gb|AAM20555.1| alpha-mannosidase
[Arabidopsis thaliana] gi|23198186|gb|AAN15620.1|
alpha-mannosidase [Arabidopsis thaliana]
Length = 1024
Score = 123 bits (308), Expect = 2e-27
Identities = 67/100 (67%), Positives = 74/100 (74%), Gaps = 3/100 (3%)
Frame = -3
Query: 551 NAKVLLRLAHLYELGEDKEYSVKASVELKKLFPNKKISKVTEMSLSANQERTEMEKKKLA 372
+ VLLRLAHLYE+ EDKE S ASVELKKLFP KKI K+TEMSLSANQER+ MEKK+L
Sbjct: 909 DGNVLLRLAHLYEVEEDKELSGVASVELKKLFPGKKIGKLTEMSLSANQERSTMEKKRLV 968
Query: 371 WKVEGSTG---EPKVVRGGPVDPTKLVVELAPMEIRTFFI 261
WKVEG E K RG +DP KL +EL PMEIRT I
Sbjct: 969 WKVEGEGSYGEEKKAKRGREIDPRKLEMELYPMEIRTVLI 1008
>dbj|BAB11126.1| alpha-mannosidase [Arabidopsis thaliana]
Length = 1030
Score = 123 bits (308), Expect = 2e-27
Identities = 67/100 (67%), Positives = 74/100 (74%), Gaps = 3/100 (3%)
Frame = -3
Query: 551 NAKVLLRLAHLYELGEDKEYSVKASVELKKLFPNKKISKVTEMSLSANQERTEMEKKKLA 372
+ VLLRLAHLYE+ EDKE S ASVELKKLFP KKI K+TEMSLSANQER+ MEKK+L
Sbjct: 915 DGNVLLRLAHLYEVEEDKELSGVASVELKKLFPGKKIGKLTEMSLSANQERSTMEKKRLV 974
Query: 371 WKVEGSTG---EPKVVRGGPVDPTKLVVELAPMEIRTFFI 261
WKVEG E K RG +DP KL +EL PMEIRT I
Sbjct: 975 WKVEGEGSYGEEKKAKRGREIDPRKLEMELYPMEIRTVLI 1014
>ref|NP_201416.1| glycosyl hydrolase family 38 (alpha-mannosidase); protein id:
At5g66150.1 [Arabidopsis thaliana]
gi|10177130|dbj|BAB10420.1| alpha-mannosidase
[Arabidopsis thaliana]
Length = 1047
Score = 120 bits (301), Expect = 1e-26
Identities = 64/97 (65%), Positives = 74/97 (75%), Gaps = 1/97 (1%)
Frame = -3
Query: 542 VLLRLAHLYELGEDKEYSVKASVELKKLFPNKKISKVTEMSLSANQERTEMEKKKLAWKV 363
VLLRLAHLYE GED +YS A VELKKLF K I +VTEMSLSANQE+ +M K+K+ WKV
Sbjct: 940 VLLRLAHLYEAGEDSDYSKIAKVELKKLFSGKMIKEVTEMSLSANQEKVKM-KEKMKWKV 998
Query: 362 EGSTGEP-KVVRGGPVDPTKLVVELAPMEIRTFFIDF 255
EG +P +RGGPVD + LVVEL PMEIRTF + F
Sbjct: 999 EGEAEQPSSPLRGGPVDKSTLVVELGPMEIRTFVVQF 1035
>gb|AAL73069.1|AC090873_15 Putative alpha-mannosidase [Oryza sativa]
gi|19919971|gb|AAM08419.1|AC112513_5 Putative
alpha-mannosidase [Oryza sativa]
Length = 438
Score = 102 bits (255), Expect = 2e-21
Identities = 56/96 (58%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
Frame = -3
Query: 539 LLRLAHLYELGEDKEYSVKASVELKKLFPNKKISKVTEMSLSANQERTEMEKKKLAWKVE 360
LLRLAHL++ ED +YSV A VEL+KLF + I +TE SLSANQ+++EM KKL W+V
Sbjct: 345 LLRLAHLFQAQEDTQYSVMAKVELRKLFGKRIIKDLTETSLSANQKKSEM--KKLNWRVT 402
Query: 359 G-STGEPKVVRGGPVDPTKLVVELAPMEIRTFFIDF 255
G S +P ++GGPVD LVVEL PMEIRTF + F
Sbjct: 403 GESKTDPAPLKGGPVDSHALVVELGPMEIRTFLLKF 438
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,484,005
Number of Sequences: 1393205
Number of extensions: 9594378
Number of successful extensions: 29660
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 28531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29611
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
