Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001207A_C02 KMC001207A_c02
(874 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568946.1| Meiosis protein mei2-related; protein id: At5g6... 119 5e-26
dbj|BAA22374.1| Mei2-like protein [Arabidopsis thaliana] gi|9758... 119 5e-26
ref|NP_196346.1| Meiosis protein mei2-related; protein id: At5g0... 116 4e-25
gb|AAL85701.1|AF474982_5 Mei2-like protein [Hordeum vulgare subs... 115 9e-25
ref|NP_174233.1| Meiosis protein mei2-related; protein id: At1g2... 70 3e-11
>ref|NP_568946.1| Meiosis protein mei2-related; protein id: At5g61960.1, supported by
cDNA: gi_17064919, supported by cDNA: gi_2443328
[Arabidopsis thaliana] gi|17064920|gb|AAL32614.1|
Mei2-like protein [Arabidopsis thaliana]
Length = 915
Score = 119 bits (299), Expect = 5e-26
Identities = 58/83 (69%), Positives = 63/83 (75%)
Frame = -2
Query: 873 AVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGSNIRVRPGK 694
A L YARIQGK+ALIAHFQNSSLMNEDKRCRPILFHTDGPNAGD EPFP+GSNIR RPGK
Sbjct: 821 ATLTYARIQGKTALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDQEPFPMGSNIRSRPGK 880
Query: 693 SRAGGNEENRGLGNPSTLASGEE 625
R+ + S + EE
Sbjct: 881 PRSSSIDNYNSFSISSVSENREE 903
>dbj|BAA22374.1| Mei2-like protein [Arabidopsis thaliana] gi|9758396|dbj|BAB08883.1|
Mei2-like protein [Arabidopsis thaliana]
Length = 884
Score = 119 bits (299), Expect = 5e-26
Identities = 58/83 (69%), Positives = 63/83 (75%)
Frame = -2
Query: 873 AVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGSNIRVRPGK 694
A L YARIQGK+ALIAHFQNSSLMNEDKRCRPILFHTDGPNAGD EPFP+GSNIR RPGK
Sbjct: 790 ATLTYARIQGKTALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDQEPFPMGSNIRSRPGK 849
Query: 693 SRAGGNEENRGLGNPSTLASGEE 625
R+ + S + EE
Sbjct: 850 PRSSSIDNYNSFSISSVSENREE 872
>ref|NP_196346.1| Meiosis protein mei2-related; protein id: At5g07290.1 [Arabidopsis
thaliana] gi|11358504|pir||T48500 Mei2-like protein -
Arabidopsis thaliana gi|7546707|emb|CAB87285.1| Mei2-like
protein [Arabidopsis thaliana]
Length = 907
Score = 116 bits (291), Expect = 4e-25
Identities = 57/76 (75%), Positives = 59/76 (77%)
Frame = -2
Query: 873 AVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGSNIRVRPGK 694
A LAY RIQGKSALIAHFQNSSLMNEDKRCRPILFHT GPNAGD EPFP+GSNIR RPGK
Sbjct: 819 ASLAYGRIQGKSALIAHFQNSSLMNEDKRCRPILFHTAGPNAGDQEPFPMGSNIRSRPGK 878
Query: 693 SRAGGNEENRGLGNPS 646
R E + S
Sbjct: 879 HRTNSIENYTNFSSSS 894
>gb|AAL85701.1|AF474982_5 Mei2-like protein [Hordeum vulgare subsp. vulgare]
Length = 961
Score = 115 bits (288), Expect = 9e-25
Identities = 54/69 (78%), Positives = 62/69 (89%)
Frame = -2
Query: 873 AVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGSNIRVRPGK 694
A LAYARIQG+S+LIAHFQNSSLMNEDKRCRPILFH+DGPNAGD EPFP+G++IR RPG+
Sbjct: 860 ASLAYARIQGRSSLIAHFQNSSLMNEDKRCRPILFHSDGPNAGDQEPFPMGTHIRSRPGR 919
Query: 693 SRAGGNEEN 667
SR EE+
Sbjct: 920 SRVLSCEES 928
>ref|NP_174233.1| Meiosis protein mei2-related; protein id: At1g29400.1 [Arabidopsis
thaliana] gi|25403060|pir||F86416 probable RNA-binding
protein MEI2, 36123-32976 [imported] - Arabidopsis
thaliana gi|12323530|gb|AAG51742.1|AC068667_21
RNA-binding protein MEI2, putative; 36123-32976
[Arabidopsis thaliana]
Length = 779
Score = 70.5 bits (171), Expect = 3e-11
Identities = 36/59 (61%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Frame = -2
Query: 873 AVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHT-DGPNAGDPEPFPLGSNIRVRP 700
A LAYARIQGKSALIAHFQNSSLMNED RCRPI+F T + P + + G + +P
Sbjct: 718 ASLAYARIQGKSALIAHFQNSSLMNEDMRCRPIIFDTPNNPESVEQVKLLFGLKVNAKP 776
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 716,012,137
Number of Sequences: 1393205
Number of extensions: 15807490
Number of successful extensions: 36285
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 34757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36266
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 46824663816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
