Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001206A_C01 KMC001206A_c01
(693 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK16176.1|AC079887_8 translation initiation factor 5A [Oryza... 300 1e-80
sp|P56336|IF54_SOLTU Eukaryotic translation initiation factor 5A... 300 2e-80
sp|Q9AXJ4|IF5A_MANES Eukaryotic translation initiation factor 5A... 299 2e-80
sp|P56335|IF53_SOLTU Eukaryotic translation initiation factor 5A... 299 3e-80
sp|P24922|IF52_NICPL Eukaryotic translation initiation factor 5A... 298 6e-80
>gb|AAK16176.1|AC079887_8 translation initiation factor 5A [Oryza sativa]
gi|14488377|gb|AAK63944.1|AC084282_25 translation
initiation factor 5A [Oryza sativa (japonica
cultivar-group)]
Length = 161
Score = 300 bits (768), Expect = 1e-80
Identities = 148/161 (91%), Positives = 155/161 (95%), Gaps = 1/161 (0%)
Frame = -2
Query: 641 MSD-EEHHFESKADAGASKTYPQQAGTIRKNGYINIKNRPCKVVEVSTSKTGKHGHAKCH 465
MSD EEHHFESKADAGASKTYPQQAGTIRKNG+I IKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 464 FVGIDIFTGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTESGGTKDDLKLPT 285
FV IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTESGGTKDDL+LP+
Sbjct: 61 FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPS 120
Query: 284 DDALLTQIKEGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 162
D+ALLTQIK+GFAEGKDL+V+VMSAMGEEQI ALKDIGPKN
Sbjct: 121 DEALLTQIKDGFAEGKDLIVTVMSAMGEEQICALKDIGPKN 161
>sp|P56336|IF54_SOLTU Eukaryotic translation initiation factor 5A-4 (eIF-5A 4) (eIF-4D)
gi|2225883|dbj|BAA20878.1| eukaryotic initiation factor
5A4 [Solanum tuberosum]
Length = 159
Score = 300 bits (767), Expect = 2e-80
Identities = 146/159 (91%), Positives = 153/159 (95%)
Frame = -2
Query: 641 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYINIKNRPCKVVEVSTSKTGKHGHAKCHF 462
MSDEEH FESKADAGASKTYPQQAGTIRK+GYI IK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1 MSDEEHQFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
Query: 461 VGIDIFTGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTESGGTKDDLKLPTD 282
V IDIFTGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT++G TKDDL+LPTD
Sbjct: 61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
Query: 281 DALLTQIKEGFAEGKDLVVSVMSAMGEEQINALKDIGPK 165
D+LL+QIK+GFAEGKDLVVSVMSAMGEEQINALKDIGPK
Sbjct: 121 DSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159
>sp|Q9AXJ4|IF5A_MANES Eukaryotic translation initiation factor 5A (eIF-5A)
gi|14193249|gb|AAK55848.1|AF266464_1 translation
initiation factor 5A [Manihot esculenta]
Length = 160
Score = 299 bits (766), Expect = 2e-80
Identities = 145/160 (90%), Positives = 154/160 (95%)
Frame = -2
Query: 641 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYINIKNRPCKVVEVSTSKTGKHGHAKCHF 462
MSDEEHHFESKADAGASKT+PQQAGTIRKNGYI IKNRPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60
Query: 461 VGIDIFTGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTESGGTKDDLKLPTD 282
VGIDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+G TKDDL+LPTD
Sbjct: 61 VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120
Query: 281 DALLTQIKEGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 162
+ LL+QIK+GFAEGKDLVVSVMSAMGEE+I +LKDIGPKN
Sbjct: 121 ENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160
>sp|P56335|IF53_SOLTU Eukaryotic translation initiation factor 5A-3 (eIF-5A 3) (eIF-4D)
gi|7443511|pir||T07133 translation initiation factor
eIF-5A.3 [similarity] - potato
gi|2225881|dbj|BAA20877.1| eukaryotic initiation factor
5A3 [Solanum tuberosum]
Length = 160
Score = 299 bits (765), Expect = 3e-80
Identities = 145/160 (90%), Positives = 151/160 (93%)
Frame = -2
Query: 641 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYINIKNRPCKVVEVSTSKTGKHGHAKCHF 462
MSDEEHHFESKADAGASKTYPQQAGTIRKNGYI IK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
Query: 461 VGIDIFTGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTESGGTKDDLKLPTD 282
V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTESG TKDDL+LPTD
Sbjct: 61 VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTD 120
Query: 281 DALLTQIKEGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 162
++LL Q+K+GF EGKDLVVSVMSAMGEEQINA+KDIG KN
Sbjct: 121 ESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTKN 160
>sp|P24922|IF52_NICPL Eukaryotic translation initiation factor 5A-2 (eIF-5A) (eIF-4D)
gi|100278|pir||S21059 translation initiation factor
eIF-5A.2 [similarity] - curled-leaved tobacco
gi|19702|emb|CAA45104.1| eukaryotic initiation factor 5A
(2) [Nicotiana plumbaginifolia]
Length = 159
Score = 298 bits (762), Expect = 6e-80
Identities = 147/159 (92%), Positives = 151/159 (94%)
Frame = -2
Query: 641 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYINIKNRPCKVVEVSTSKTGKHGHAKCHF 462
MSDEEH FESKADAGASKTYPQQAGTIRKNG+I IK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1 MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
Query: 461 VGIDIFTGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTESGGTKDDLKLPTD 282
V IDIFTGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+G TKDDL+LPTD
Sbjct: 61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
Query: 281 DALLTQIKEGFAEGKDLVVSVMSAMGEEQINALKDIGPK 165
D LLTQIK+GFAEGKDLVVSVMSAMGEEQI ALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 591,255,671
Number of Sequences: 1393205
Number of extensions: 13670425
Number of successful extensions: 87245
Number of sequences better than 10.0: 358
Number of HSP's better than 10.0 without gapping: 61322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79958
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
