Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001205A_C01 KMC001205A_c01
(736 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10266.1| gene_id:MQJ2.12~unknown protein [Arabidopsis tha... 180 2e-44
ref|NP_200659.2| putative protein; protein id: At5g58510.1, supp... 180 2e-44
ref|XP_145936.1| similar to hypothetical protein FLJ20093 [Homo ... 37 0.22
gb|ZP_00052023.1| hypothetical protein [Magnetospirillum magneto... 35 1.4
dbj|BAC26659.1| unnamed protein product [Mus musculus] 33 4.2
>dbj|BAB10266.1| gene_id:MQJ2.12~unknown protein [Arabidopsis thaliana]
Length = 304
Score = 180 bits (456), Expect = 2e-44
Identities = 96/171 (56%), Positives = 123/171 (71%), Gaps = 10/171 (5%)
Frame = -1
Query: 733 SETIEDLRRLSVAFENVEKLLTLAASLHRKLVRAPRLSRDIFSDYYSFYIPTMGTGLSED 554
++T++DL+RL + FENVEKL+ +AAS+HRK + A RL++ IFSD+Y Y PTMG +++
Sbjct: 134 AKTVKDLKRLCMVFENVEKLVAVAASIHRKFLDASRLAQVIFSDFYGVYAPTMGMSANDE 193
Query: 553 IEKEFDKKQVVKD----REREVLSNMFVPPTANPSWRKVLSMGNLLNGHEPILREIIFSL 386
K + +V + RER+V+SN+F PP+AN SWRKVLSMGNLLNGHEPILREIIFS
Sbjct: 194 ENKSRTEMEVSRQEVSLRERQVVSNLFSPPSANQSWRKVLSMGNLLNGHEPILREIIFST 253
Query: 385 RDRW-NGNHYAARGGSVSQ-----QEIETYRMYICGTSNALRVALSVVSCD 251
D NG HYAA + +EIET+RMY+ GTSN LRV LSV SCD
Sbjct: 254 GDDVNNGIHYAAAADVAATSDRKGEEIETHRMYVSGTSNDLRVGLSVTSCD 304
>ref|NP_200659.2| putative protein; protein id: At5g58510.1, supported by cDNA:
gi_20259511 [Arabidopsis thaliana]
gi|20259512|gb|AAM13876.1| unknown protein [Arabidopsis
thaliana] gi|21436471|gb|AAM51436.1| unknown protein
[Arabidopsis thaliana]
Length = 963
Score = 180 bits (456), Expect = 2e-44
Identities = 96/171 (56%), Positives = 123/171 (71%), Gaps = 10/171 (5%)
Frame = -1
Query: 733 SETIEDLRRLSVAFENVEKLLTLAASLHRKLVRAPRLSRDIFSDYYSFYIPTMGTGLSED 554
++T++DL+RL + FENVEKL+ +AAS+HRK + A RL++ IFSD+Y Y PTMG +++
Sbjct: 793 AKTVKDLKRLCMVFENVEKLVAVAASIHRKFLDASRLAQVIFSDFYGVYAPTMGMSANDE 852
Query: 553 IEKEFDKKQVVKD----REREVLSNMFVPPTANPSWRKVLSMGNLLNGHEPILREIIFSL 386
K + +V + RER+V+SN+F PP+AN SWRKVLSMGNLLNGHEPILREIIFS
Sbjct: 853 ENKSRTEMEVSRQEVSLRERQVVSNLFSPPSANQSWRKVLSMGNLLNGHEPILREIIFST 912
Query: 385 RDRW-NGNHYAARGGSVSQ-----QEIETYRMYICGTSNALRVALSVVSCD 251
D NG HYAA + +EIET+RMY+ GTSN LRV LSV SCD
Sbjct: 913 GDDVNNGIHYAAAADVAATSDRKGEEIETHRMYVSGTSNDLRVGLSVTSCD 963
>ref|XP_145936.1| similar to hypothetical protein FLJ20093 [Homo sapiens] [Mus
musculus]
Length = 526
Score = 37.4 bits (85), Expect = 0.22
Identities = 27/70 (38%), Positives = 36/70 (50%)
Frame = +2
Query: 149 GWNAMGIGERFS*ASIRGPDAICDTW*PINNIKLITRDNRKCYP*GIRGSTYVHSVSFNF 328
GW A I A+IRG DA C IN L T+D+R C P + +T+ HS S
Sbjct: 428 GWTAAHI------AAIRGQDA-CLQALIINGANLATQDDRGCTPLHL-AATHGHSFSLQI 479
Query: 329 LLRNTTTTSC 358
+LR+ + SC
Sbjct: 480 MLRSGVSPSC 489
>gb|ZP_00052023.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 289
Score = 34.7 bits (78), Expect = 1.4
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +2
Query: 353 SCIVITIPSVAQRKNNLPEDRFMTIEKISHAQNLPPRRVS 472
S + I IPS+A+R+ ++PE +E+IS A LP RR++
Sbjct: 134 SVVPIRIPSLAERREDVPELITFFMEQISAATGLPRRRIA 173
>dbj|BAC26659.1| unnamed protein product [Mus musculus]
Length = 516
Score = 33.1 bits (74), Expect = 4.2
Identities = 25/64 (39%), Positives = 33/64 (51%)
Frame = +2
Query: 149 GWNAMGIGERFS*ASIRGPDAICDTW*PINNIKLITRDNRKCYP*GIRGSTYVHSVSFNF 328
GW A I A+IRG DA C IN L T+D+R C P + +T+ HS S
Sbjct: 93 GWTAAHI------AAIRGQDA-CLQALIINGANLATQDDRGCTPLHL-AATHGHSFSLQI 144
Query: 329 LLRN 340
+LR+
Sbjct: 145 MLRS 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 610,869,782
Number of Sequences: 1393205
Number of extensions: 13023921
Number of successful extensions: 35365
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 34125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35330
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
