Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001204A_C01 KMC001204A_c01
(838 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191814.1| putative protein; protein id: At3g62550.1, supp... 115 5e-30
dbj|BAB20643.1| P0475H04.9 [Oryza sativa (japonica cultivar-grou... 126 5e-28
gb|AAM09541.1|AF491815_1 putative universal stress protein USP1 ... 80 2e-18
dbj|BAC16006.1| contains ESTs AU063900(E1774),AU094307(E4059)~si... 78 1e-17
gb|AAD46412.1|AF096262_1 ER6 protein [Lycopersicon esculentum] 74 1e-16
>ref|NP_191814.1| putative protein; protein id: At3g62550.1, supported by cDNA:
gi_14334945, supported by cDNA: gi_16323381 [Arabidopsis
thaliana] gi|14334946|gb|AAK59650.1| unknown protein
[Arabidopsis thaliana] gi|16323382|gb|AAL15185.1|
unknown protein [Arabidopsis thaliana]
Length = 162
Score = 115 bits (287), Expect(2) = 5e-30
Identities = 62/137 (45%), Positives = 86/137 (62%), Gaps = 3/137 (2%)
Frame = -1
Query: 730 MAETSGIERRIMVTVDEGDESMYALSWCLKNLAFQNDKDHLILLYVKPPRVVYSAFDGTG 551
M ET ER+I+V VDE +ESM ALSW L NL + LILLYVKPP VYS+ D G
Sbjct: 1 MEETK--ERKIVVAVDESEESMEALSWSLDNLFPYGSNNTLILLYVKPPLPVYSSLDAAG 58
Query: 550 YLFSSDITATMERVSQQVAEGVLERAKGLCNNVE---NVEVKAESGDPRDVICQMVQKWG 380
++ + D A +++ ++ E V+ R++ + + E N+E + GD ++VIC VQK
Sbjct: 59 FIVTGDPVAALKKYEYELVESVMARSRTVYQDYESDINIERRVGRGDAKEVICNAVQKLR 118
Query: 379 VDVLVMGSHGYGVIKRA 329
VD+LVMG+H YG KRA
Sbjct: 119 VDMLVMGTHDYGFFKRA 135
Score = 38.9 bits (89), Expect(2) = 5e-30
Identities = 17/21 (80%), Positives = 19/21 (89%)
Frame = -2
Query: 324 LGSVSNHCAQNVKCPVVIVKK 262
LGSVS +CA+ VKCPVVIVKK
Sbjct: 137 LGSVSEYCAKRVKCPVVIVKK 157
>dbj|BAB20643.1| P0475H04.9 [Oryza sativa (japonica cultivar-group)]
gi|21104578|dbj|BAB93172.1| B1146F03.27 [Oryza sativa
(japonica cultivar-group)]
Length = 164
Score = 126 bits (316), Expect = 5e-28
Identities = 62/136 (45%), Positives = 91/136 (66%), Gaps = 2/136 (1%)
Frame = -1
Query: 727 AETSGIERRIMVTVDEGDESMYALSWCLKNLAFQNDKDHLILLYVKPPRVVYSAFDGTGY 548
AE G RRI+V VDE +ES +AL+WCL N+ + D L+LL+ + PR VY+A D +GY
Sbjct: 26 AEAPG--RRIVVAVDESEESTHALTWCLANVVSSSGGDTLVLLHARRPRPVYAAMDSSGY 83
Query: 547 LFSSDITATMERVSQQVAEGVLERAKGLCNNVEN--VEVKAESGDPRDVICQMVQKWGVD 374
+ +SD+ A+M++ + V+ + +AK +C + VE ESGDPRDVIC +K D
Sbjct: 84 MMTSDVMASMDKYAAAVSAAAVGKAKHICAAFPHVTVETMVESGDPRDVICDATEKMAAD 143
Query: 373 VLVMGSHGYGVIKRAF 326
+LVMG+HGYG+I+R +
Sbjct: 144 LLVMGTHGYGLIQRYY 159
>gb|AAM09541.1|AF491815_1 putative universal stress protein USP1 [Oryza sativa (indica
cultivar-group)]
Length = 171
Score = 80.1 bits (196), Expect(2) = 2e-18
Identities = 51/142 (35%), Positives = 80/142 (55%), Gaps = 7/142 (4%)
Frame = -1
Query: 730 MAETSGIERR--IMVTVDEGDESMYALSWCLKNLAFQ---NDKDHLILLYVKP-PRVVYS 569
MA G +R+ ++V VD+ + S YAL W +++LA L++++ KP P V
Sbjct: 1 MAAAEGEQRKTVVVVGVDDSEHSNYALEWTMQHLASGMAGGGGAELVIVHAKPSPSSVVG 60
Query: 568 AFDGTGYLFSSDITATMERVSQQVAEGVLERAKGLC-NNVENVEVKAESGDPRDVICQMV 392
G G S ++ +E ++ AE V+E+A+ LC N + ++ G+PR V+C V
Sbjct: 61 FGAGPG---SGEVVRYVEADLRKTAEDVVEKARRLCIANAMHALIEVIEGEPRYVLCNAV 117
Query: 391 QKWGVDVLVMGSHGYGVIKRAF 326
+K +LV+GSHGYG IKRAF
Sbjct: 118 EKHSAGLLVVGSHGYGAIKRAF 139
Score = 34.7 bits (78), Expect(2) = 2e-18
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = -2
Query: 324 LGSVSNHCAQNVKCPVVIVKKPKS 253
LGSVS++CA + C V+IVK+PK+
Sbjct: 140 LGSVSDYCAHHAHCSVMIVKQPKA 163
>dbj|BAC16006.1| contains ESTs AU063900(E1774),AU094307(E4059)~similar to universal
stress protein USP1 [Oryza sativa (japonica
cultivar-group)]
Length = 171
Score = 77.8 bits (190), Expect(2) = 1e-17
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Frame = -1
Query: 700 IMVTVDEGDESMYALSWCLKNLAFQ---NDKDHLILLYVKP-PRVVYSAFDGTGYLFSSD 533
++V VD+ + S YAL W +++LA + L++++ KP P V G G S +
Sbjct: 13 VVVGVDDSEHSNYALEWTMQHLASGMAGSGGAELVIVHAKPSPSSVVGFGAGPG---SGE 69
Query: 532 ITATMERVSQQVAEGVLERAKGLC-NNVENVEVKAESGDPRDVICQMVQKWGVDVLVMGS 356
+ +E ++ AE V+E+A+ LC N + ++ G+PR V+C V+K +LV+GS
Sbjct: 70 VVRYVEADLRKTAEDVVEKARRLCIANAMHALIEVIEGEPRYVLCNAVEKHSAGLLVVGS 129
Query: 355 HGYGVIKRAF 326
HGYG IKRAF
Sbjct: 130 HGYGAIKRAF 139
Score = 34.7 bits (78), Expect(2) = 1e-17
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = -2
Query: 324 LGSVSNHCAQNVKCPVVIVKKPKS 253
LGSVS++CA + C V+IVK+PK+
Sbjct: 140 LGSVSDYCAHHAHCSVMIVKQPKA 163
>gb|AAD46412.1|AF096262_1 ER6 protein [Lycopersicon esculentum]
Length = 168
Score = 74.3 bits (181), Expect(2) = 1e-16
Identities = 45/140 (32%), Positives = 78/140 (55%), Gaps = 15/140 (10%)
Frame = -1
Query: 700 IMVTVDEGDESMYALSWCLKNLAFQ-NDKDH------LILLYVKPPRVVYSAFDGTGYLF 542
++V+VD +ESM AL+W L N+ + +D D +++L+V+ P + + + F
Sbjct: 6 VIVSVDGSEESMNALNWTLDNIKLKPHDPDSPESQGFIVILHVQSPPSIAAGLNPGAIPF 65
Query: 541 S--SDI-----TATMERVSQQVAEGVLERAKGLCNNVE-NVEVKAESGDPRDVICQMVQK 386
SD+ TA +E +++ + +L+ A G+C NV+ + GDP++ IC V++
Sbjct: 66 GGPSDVEVPAFTAAIEAHQKRITQAILDHALGICAKKNANVKTQVVIGDPKEKICDAVEE 125
Query: 385 WGVDVLVMGSHGYGVIKRAF 326
D+LVMGS +G IKR F
Sbjct: 126 MNADLLVMGSRAFGPIKRMF 145
Score = 34.3 bits (77), Expect(2) = 1e-16
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = -2
Query: 324 LGSVSNHCAQNVKCPVVIVK 265
LGSVSN+C + +CPV+IVK
Sbjct: 146 LGSVSNYCTNHAQCPVIIVK 165
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 764,283,668
Number of Sequences: 1393205
Number of extensions: 18458962
Number of successful extensions: 55652
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 51123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55500
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 43480044972
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
