Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001202A_C03 KMC001202A_c03
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568857.1| putative protein; protein id: At5g57410.1, supp... 42 0.007
gb|AAO00808.1| Unknown protein [Arabidopsis thaliana] 38 0.075
dbj|BAC43664.1| unknown protein [Arabidopsis thaliana] gi|289509... 38 0.075
gb|AAB18530.1| unnamed protein product [Escherichia coli] 31 9.1
>ref|NP_568857.1| putative protein; protein id: At5g57410.1, supported by cDNA:
37326. [Arabidopsis thaliana]
Length = 373
Score = 41.6 bits (96), Expect = 0.007
Identities = 21/34 (61%), Positives = 25/34 (72%)
Frame = -3
Query: 366 KKDVFDLPFHTVRDQIEESL*TKMASMKLGLLIL 265
K DVFDLP+ R QIEESL TKMAS+K ++ L
Sbjct: 280 KTDVFDLPYRMARGQIEESLRTKMASIKESMVQL 313
>gb|AAO00808.1| Unknown protein [Arabidopsis thaliana]
Length = 284
Score = 38.1 bits (87), Expect = 0.075
Identities = 18/28 (64%), Positives = 21/28 (74%)
Frame = -3
Query: 366 KKDVFDLPFHTVRDQIEESL*TKMASMK 283
K DVFDLPF R QIE+SL +KM S+K
Sbjct: 188 KTDVFDLPFRMARGQIEDSLRSKMVSIK 215
>dbj|BAC43664.1| unknown protein [Arabidopsis thaliana] gi|28950955|gb|AAO63401.1|
At2g18870 [Arabidopsis thaliana]
Length = 382
Score = 38.1 bits (87), Expect = 0.075
Identities = 18/28 (64%), Positives = 21/28 (74%)
Frame = -3
Query: 366 KKDVFDLPFHTVRDQIEESL*TKMASMK 283
K DVFDLPF R QIE+SL +KM S+K
Sbjct: 286 KTDVFDLPFRMARGQIEDSLRSKMVSIK 313
>gb|AAB18530.1| unnamed protein product [Escherichia coli]
Length = 365
Score = 31.2 bits (69), Expect = 9.1
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 373 KVEEGCI*PTFSHS*RSNRRKPLNQDGFYE-AGSTDSVPKNASLTLLLCR 227
KVE+ C+ P + R R KP N+ GFY G ++ L+LCR
Sbjct: 316 KVEKNCVNPHVATKPRLRRVKPDNRSGFYSLLGCSNCCSPGLIKRLMLCR 365
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,051,471
Number of Sequences: 1393205
Number of extensions: 8370612
Number of successful extensions: 18263
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18258
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
