Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001200A_C01 KMC001200A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86118.1| putative dynamin-like protein ADL2 [Oryza sativa... 60 2e-08
dbj|BAB85645.1| dynamin like protein 2b [Arabidopsis thaliana] 48 1e-04
gb|AAM20619.1| dynamin-like protein [Arabidopsis thaliana] 48 1e-04
ref|NP_565362.1| dynamin-like protein; protein id: At2g14120.1, ... 48 1e-04
pir||D84514 dynamin-like protein [imported] - Arabidopsis thaliana 48 1e-04
>dbj|BAB86118.1| putative dynamin-like protein ADL2 [Oryza sativa (japonica
cultivar-group)]
Length = 786
Score = 60.5 bits (145), Expect = 2e-08
Identities = 31/57 (54%), Positives = 40/57 (69%), Gaps = 1/57 (1%)
Frame = -2
Query: 583 KRKRCRELLRAYPQAFRDLDELPLEAETVERGYG-SPEATGLPRIRGLPSSSMYSSS 416
KR++ R+ L+ QA++ LDE+PLEA+TVERGY +ATGLPR GL SS SS
Sbjct: 671 KRRQIRDTLKVLQQAYKTLDEIPLEADTVERGYSLDADATGLPRAHGLSSSFQDGSS 727
>dbj|BAB85645.1| dynamin like protein 2b [Arabidopsis thaliana]
Length = 780
Score = 47.8 bits (112), Expect = 1e-04
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -2
Query: 583 KRKRCRELLRAYPQAFRDLDELPLEAETVERGY 485
KRKR +E LR QA R LDELPLEAE+VERGY
Sbjct: 719 KRKRTQETLRILQQANRTLDELPLEAESVERGY 751
>gb|AAM20619.1| dynamin-like protein [Arabidopsis thaliana]
Length = 780
Score = 47.8 bits (112), Expect = 1e-04
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -2
Query: 583 KRKRCRELLRAYPQAFRDLDELPLEAETVERGY 485
KRKR +E LR QA R LDELPLEAE+VERGY
Sbjct: 719 KRKRTQETLRILQQANRTLDELPLEAESVERGY 751
>ref|NP_565362.1| dynamin-like protein; protein id: At2g14120.1, supported by cDNA:
gi_19032338, supported by cDNA: gi_20466603 [Arabidopsis
thaliana] gi|20198190|gb|AAM15450.1| dynamin-like
protein [Arabidopsis thaliana]
Length = 780
Score = 47.8 bits (112), Expect = 1e-04
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -2
Query: 583 KRKRCRELLRAYPQAFRDLDELPLEAETVERGY 485
KRKR +E LR QA R LDELPLEAE+VERGY
Sbjct: 719 KRKRTQETLRILQQANRTLDELPLEAESVERGY 751
>pir||D84514 dynamin-like protein [imported] - Arabidopsis thaliana
Length = 782
Score = 47.8 bits (112), Expect = 1e-04
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -2
Query: 583 KRKRCRELLRAYPQAFRDLDELPLEAETVERGY 485
KRKR +E LR QA R LDELPLEAE+VERGY
Sbjct: 721 KRKRTQETLRILQQANRTLDELPLEAESVERGY 753
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,088,202
Number of Sequences: 1393205
Number of extensions: 11401623
Number of successful extensions: 33710
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 32498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33694
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
