Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001198A_C02 KMC001198A_c02
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189910.1| putative protein; protein id: At3g43240.1 [Arab... 87 9e-20
dbj|BAC41897.1| putative trithorax 5 TX5 [Arabidopsis thaliana] ... 34 1.1
emb|CAB48401.1| death inducer-obliterator-1 [Mus musculus] 32 5.6
dbj|BAC31270.1| unnamed protein product [Mus musculus] 32 5.6
ref|XP_130761.1| death inducer-obliterator 1 [Mus musculus] gi|2... 32 5.6
>ref|NP_189910.1| putative protein; protein id: At3g43240.1 [Arabidopsis thaliana]
gi|11288869|pir||T49238 hypothetical protein F7K15.90 -
Arabidopsis thaliana gi|7649364|emb|CAB89045.1| putative
protein [Arabidopsis thaliana]
Length = 717
Score = 86.7 bits (213), Expect(2) = 9e-20
Identities = 35/38 (92%), Positives = 35/38 (92%)
Frame = -1
Query: 469 WVTCGICGEWAHSGCDRRPGLGAFKDYAKTDGLEYVCP 356
WV CG CGEWAH GCDRRPGLGAFKDYAKTDGLEYVCP
Sbjct: 658 WVNCGSCGEWAHFGCDRRPGLGAFKDYAKTDGLEYVCP 695
Score = 31.2 bits (69), Expect(2) = 9e-20
Identities = 11/15 (73%), Positives = 12/15 (79%)
Frame = -3
Query: 515 DGECCLLCHSRAAGD 471
DGECCL+C S AGD
Sbjct: 643 DGECCLICRSSTAGD 657
>dbj|BAC41897.1| putative trithorax 5 TX5 [Arabidopsis thaliana]
gi|29029074|gb|AAO64916.1| At5g53430 [Arabidopsis
thaliana]
Length = 1043
Score = 33.9 bits (76), Expect = 1.1
Identities = 17/39 (43%), Positives = 20/39 (50%)
Frame = -1
Query: 472 TWVTCGICGEWAHSGCDRRPGLGAFKDYAKTDGLEYVCP 356
+WV C C W HS CD + FKD +TD Y CP
Sbjct: 430 SWVRCDGCKVWIHSACD-QISHKHFKDLGETD---YYCP 464
>emb|CAB48401.1| death inducer-obliterator-1 [Mus musculus]
Length = 614
Score = 31.6 bits (70), Expect = 5.6
Identities = 20/70 (28%), Positives = 31/70 (43%), Gaps = 3/70 (4%)
Frame = -1
Query: 508 NAACCVTAVPPVT--WVTCGICGEWAHSGCDRRPGLGAFKD-YAKTDGLEYVCPPSTHIQ 338
NA C+ P + C C EW H C G+ + + +G +Y+CP T +Q
Sbjct: 264 NALYCICRQPHNNRFMICCDRCEEWFHGDC---VGISEARGRLLERNGEDYICPNCTILQ 320
Query: 337 FQ*EVSVNCT 308
Q E + + T
Sbjct: 321 VQDETNGSAT 330
>dbj|BAC31270.1| unnamed protein product [Mus musculus]
Length = 614
Score = 31.6 bits (70), Expect = 5.6
Identities = 20/70 (28%), Positives = 31/70 (43%), Gaps = 3/70 (4%)
Frame = -1
Query: 508 NAACCVTAVPPVT--WVTCGICGEWAHSGCDRRPGLGAFKD-YAKTDGLEYVCPPSTHIQ 338
NA C+ P + C C EW H C G+ + + +G +Y+CP T +Q
Sbjct: 264 NALYCICRQPHNNRFMICCDRCEEWFHGDC---VGISEARGRLLERNGEDYICPNCTILQ 320
Query: 337 FQ*EVSVNCT 308
Q E + + T
Sbjct: 321 VQDETNGSAT 330
>ref|XP_130761.1| death inducer-obliterator 1 [Mus musculus]
gi|25055580|ref|XP_203797.1| death inducer-obliterator 1
[Mus musculus]
Length = 614
Score = 31.6 bits (70), Expect = 5.6
Identities = 20/70 (28%), Positives = 31/70 (43%), Gaps = 3/70 (4%)
Frame = -1
Query: 508 NAACCVTAVPPVT--WVTCGICGEWAHSGCDRRPGLGAFKD-YAKTDGLEYVCPPSTHIQ 338
NA C+ P + C C EW H C G+ + + +G +Y+CP T +Q
Sbjct: 264 NALYCICRQPHNNRFMICCDRCEEWFHGDC---VGISEARGRLLERNGEDYICPNCTILQ 320
Query: 337 FQ*EVSVNCT 308
Q E + + T
Sbjct: 321 VQDETNGSAT 330
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,373,123
Number of Sequences: 1393205
Number of extensions: 9664795
Number of successful extensions: 21879
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 21264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21857
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
