Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001194A_C01 KMC001194A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79248.1|AC006917_33 F10B6.9 [Arabidopsis thaliana] 38 0.070
gb|AAM53326.1| unknown protein [Arabidopsis thaliana] 38 0.070
ref|NP_172922.1| hypothetical protein; protein id: At1g14690.1 [... 38 0.070
ref|NP_178300.1| unknown protein; protein id: At2g01910.1 [Arabi... 34 1.0
gb|AAO06976.1| Unknown protein [Oryza sativa (japonica cultivar-... 32 5.0
>gb|AAF79248.1|AC006917_33 F10B6.9 [Arabidopsis thaliana]
Length = 635
Score = 38.1 bits (87), Expect = 0.070
Identities = 18/26 (69%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Frame = -2
Query: 542 LNYVAISKEDTMS-YSSHCGSEPESP 468
LN+VAI KED++S Y+S CGSEP+SP
Sbjct: 607 LNFVAIPKEDSVSTYTSVCGSEPDSP 632
>gb|AAM53326.1| unknown protein [Arabidopsis thaliana]
Length = 603
Score = 38.1 bits (87), Expect = 0.070
Identities = 18/26 (69%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Frame = -2
Query: 542 LNYVAISKEDTMS-YSSHCGSEPESP 468
LN+VAI KED++S Y+S CGSEP+SP
Sbjct: 575 LNFVAIPKEDSVSTYTSVCGSEPDSP 600
>ref|NP_172922.1| hypothetical protein; protein id: At1g14690.1 [Arabidopsis
thaliana]
Length = 707
Score = 38.1 bits (87), Expect = 0.070
Identities = 18/26 (69%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Frame = -2
Query: 542 LNYVAISKEDTMS-YSSHCGSEPESP 468
LN+VAI KED++S Y+S CGSEP+SP
Sbjct: 508 LNFVAIPKEDSVSTYTSVCGSEPDSP 533
>ref|NP_178300.1| unknown protein; protein id: At2g01910.1 [Arabidopsis thaliana]
gi|25410943|pir||F84430 hypothetical protein At2g01910
[imported] - Arabidopsis thaliana
gi|4522009|gb|AAD21782.1| unknown protein [Arabidopsis
thaliana]
Length = 608
Score = 34.3 bits (77), Expect = 1.0
Identities = 18/29 (62%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Frame = -2
Query: 542 LNYVAISKEDTMS--YSSHCGSEPESPPQ 462
LNYVA+ KEDT+S Y+S SEP+SP Q
Sbjct: 579 LNYVAMQKEDTVSTTYTSIYSSEPDSPLQ 607
>gb|AAO06976.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 607
Score = 32.0 bits (71), Expect = 5.0
Identities = 15/26 (57%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = -2
Query: 542 LNYVAISKEDTM-SYSSHCGSEPESP 468
LN+ +SKED+M S++S GSEP+SP
Sbjct: 578 LNFSTVSKEDSMSSFASISGSEPDSP 603
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,512,590
Number of Sequences: 1393205
Number of extensions: 8991418
Number of successful extensions: 17215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17206
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
