Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001193A_C01 KMC001193A_c01
(673 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568909.1| Expressed protein; protein id: At5g59515.1, sup... 51 2e-05
dbj|BAC42834.1| unknown protein [Arabidopsis thaliana] 49 5e-05
ref|NP_671897.1| unknown protein; protein id: At2g29125.1 [Arabi... 47 2e-04
dbj|BAB63685.1| P0518C01.24 [Oryza sativa (japonica cultivar-gro... 46 4e-04
ref|NP_565910.1| Expressed protein; protein id: At2g39705.1, sup... 45 0.001
>ref|NP_568909.1| Expressed protein; protein id: At5g59515.1, supported by cDNA:
157709. [Arabidopsis thaliana]
gi|21553697|gb|AAM62790.1| unknown [Arabidopsis
thaliana]
Length = 144
Score = 50.8 bits (120), Expect = 2e-05
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = -3
Query: 653 SESQPRRKTSLRKRCFQVAKHQKTRFYILGRCITMLLCWHDHS 525
S S ++ S+ ++C +AK K+RFYI+ RC+ ML+CWH H+
Sbjct: 99 SRSLSQKGASVTRKCRNMAKEHKSRFYIMKRCVLMLVCWHKHA 141
>dbj|BAC42834.1| unknown protein [Arabidopsis thaliana]
Length = 107
Score = 49.3 bits (116), Expect = 5e-05
Identities = 20/46 (43%), Positives = 29/46 (62%)
Frame = -3
Query: 665 SVFTSESQPRRKTSLRKRCFQVAKHQKTRFYILGRCITMLLCWHDH 528
S + S + K S+ ++ +AK QK RFYI+ RC+ ML+CWH H
Sbjct: 60 SSISRSSSKKEKGSITQKYSSLAKEQKGRFYIMRRCVAMLVCWHKH 105
>ref|NP_671897.1| unknown protein; protein id: At2g29125.1 [Arabidopsis thaliana]
gi|22530996|gb|AAM97002.1| unknown protein [Arabidopsis
thaliana] gi|23197786|gb|AAN15420.1| unknown protein
[Arabidopsis thaliana]
Length = 115
Score = 47.4 bits (111), Expect = 2e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = -3
Query: 647 SQPRRKTSLRKRCFQVAKHQKTRFYILGRCITMLLCWHDHSIS 519
S +S+ ++ +AK QK RFYI+ RC+ ML+CWH H S
Sbjct: 73 SSSSSSSSITQKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 115
>dbj|BAB63685.1| P0518C01.24 [Oryza sativa (japonica cultivar-group)]
gi|20160923|dbj|BAB89859.1| P0698H10.2 [Oryza sativa
(japonica cultivar-group)]
Length = 149
Score = 46.2 bits (108), Expect = 4e-04
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -3
Query: 650 ESQPRRKTSLRKRCFQVAKHQKTRFYILGRCITMLLCWHDH 528
+ Q L K+C + K + RFYI+ RC++ML+CW D+
Sbjct: 109 QQQSNNSQRLSKKCVEAVKEHRARFYIVRRCVSMLVCWRDY 149
>ref|NP_565910.1| Expressed protein; protein id: At2g39705.1, supported by cDNA:
27620. [Arabidopsis thaliana] gi|20197045|gb|AAM14893.1|
Expressed protein [Arabidopsis thaliana]
gi|21555300|gb|AAM63828.1| unknown [Arabidopsis
thaliana] gi|26450322|dbj|BAC42277.1| unknown protein
[Arabidopsis thaliana] gi|28827724|gb|AAO50706.1|
unknown protein [Arabidopsis thaliana]
Length = 87
Score = 44.7 bits (104), Expect = 0.001
Identities = 18/46 (39%), Positives = 29/46 (62%)
Frame = -3
Query: 665 SVFTSESQPRRKTSLRKRCFQVAKHQKTRFYILGRCITMLLCWHDH 528
S F + Q R + ++C ++ K Q+ RFYI+ RC+ ML+CW D+
Sbjct: 40 SSFNGKKQGR--CAFTRKCARLVKEQRARFYIMRRCVIMLICWRDN 83
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,935,301
Number of Sequences: 1393205
Number of extensions: 12216675
Number of successful extensions: 27732
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 26937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27724
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
