Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001192A_C01 KMC001192A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G86452 hypothetical protein F9L11.1 - Arabidopsis thaliana ... 57 1e-07
ref|NP_174558.1| hypothetical protein; protein id: At1g32810.1 [... 57 1e-07
emb|CAD39984.1| OSJNBb0045P24.2 [Oryza sativa (japonica cultivar... 55 9e-07
gb|AAO61781.1| chromo-helicase DNA-binding protein [Taeniopygia ... 34 1.7
gb|AAM11091.1| GH28796p [Drosophila melanogaster] 32 4.9
>pir||G86452 hypothetical protein F9L11.1 - Arabidopsis thaliana
gi|6910567|gb|AAF31272.1|AC006424_1 Location of EST
206I21T7, gb|N37185 [Arabidopsis thaliana]
Length = 1068
Score = 57.4 bits (137), Expect = 1e-07
Identities = 34/81 (41%), Positives = 51/81 (61%), Gaps = 9/81 (11%)
Frame = -3
Query: 571 EEFPKGXRKARKRRRLALHGRAVNDVRRRXKADSQTDED-VGPFSNSSEESIF---SEDE 404
EEFPKG RKARKRRRL++ + + +R++ + ++ED FS++SEESIF E+E
Sbjct: 984 EEFPKGKRKARKRRRLSIQRKGIKVLRKKRNEEEVSEEDEEDAFSDTSEESIFCDEEEEE 1043
Query: 403 IQNGRTGP-----AGSTSDEA 356
+ G T + S+S+EA
Sbjct: 1044 EEEGHTATGTGQVSASSSEEA 1064
>ref|NP_174558.1| hypothetical protein; protein id: At1g32810.1 [Arabidopsis
thaliana]
Length = 654
Score = 57.4 bits (137), Expect = 1e-07
Identities = 34/81 (41%), Positives = 51/81 (61%), Gaps = 9/81 (11%)
Frame = -3
Query: 571 EEFPKGXRKARKRRRLALHGRAVNDVRRRXKADSQTDED-VGPFSNSSEESIF---SEDE 404
EEFPKG RKARKRRRL++ + + +R++ + ++ED FS++SEESIF E+E
Sbjct: 570 EEFPKGKRKARKRRRLSIQRKGIKVLRKKRNEEEVSEEDEEDAFSDTSEESIFCDEEEEE 629
Query: 403 IQNGRTGP-----AGSTSDEA 356
+ G T + S+S+EA
Sbjct: 630 EEEGHTATGTGQVSASSSEEA 650
>emb|CAD39984.1| OSJNBb0045P24.2 [Oryza sativa (japonica cultivar-group)]
Length = 1255
Score = 54.7 bits (130), Expect = 9e-07
Identities = 29/58 (50%), Positives = 35/58 (60%)
Frame = -3
Query: 598 EGKNFELXKEEFPKGXRKARKRRRLALHGRAVNDVRRRXKADSQTDEDVGPFSNSSEE 425
E N E E P+G RKARK RRL L GR VND R+R DS +D+D S+SS +
Sbjct: 1174 EDTNAESHHEILPRGKRKARKCRRLELKGRRVNDTRKRSSFDSASDDDDTTLSDSSSD 1231
>gb|AAO61781.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
gi|28975393|gb|AAO61782.1| chromo-helicase DNA-binding
protein [Taeniopygia guttata]
Length = 1786
Score = 33.9 bits (76), Expect = 1.7
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -3
Query: 520 LHGRAVNDVRRRXKADSQTDEDVGPFSNSSEESIFSEDEIQNGRTGPAGSTSDEAGS 350
++G + DVR R SQ+D+D G S S+ ES S +G + S+ E+GS
Sbjct: 1 MNGHSDEDVRNRSGESSQSDDDSG--SASASESGSSSGSSSDGSRSQSSSSDSESGS 55
>gb|AAM11091.1| GH28796p [Drosophila melanogaster]
Length = 743
Score = 32.3 bits (72), Expect = 4.9
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = -3
Query: 475 DSQTDEDVGPFSNSSEESIFSEDEIQ 398
DS +++D+GP+S SSE+ +EDE++
Sbjct: 213 DSSSNDDMGPYSLSSEDETTTEDEVE 238
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,670,940
Number of Sequences: 1393205
Number of extensions: 10025894
Number of successful extensions: 24162
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 23527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24142
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
