Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001191A_C01 KMC001191A_c01
(651 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P53536|PHSL_VICFA Alpha-1,4 glucan phosphorylase, L isozyme, ... 165 4e-40
pir||S47243 starch phosphorylase (EC 2.4.1.1) isoform L precurso... 165 4e-40
emb|CAA36612.1| starch phosphorylase (AA 1-966) [Solanum tuberosum] 161 6e-39
sp|P04045|PHS1_SOLTU Alpha-1,4 glucan phosphorylase, L-1 isozyme... 161 6e-39
sp|P27598|PHSL_IPOBA Alpha-1,4 glucan phosphorylase, L isozyme, ... 161 8e-39
>sp|P53536|PHSL_VICFA Alpha-1,4 glucan phosphorylase, L isozyme, chloroplast precursor
(Starch phosphorylase L) gi|1616637|emb|CAA85354.1|
alpha-1,4 Glucan Phosphorylase, L isoform precursor
[Vicia faba]
Length = 1003
Score = 165 bits (418), Expect = 4e-40
Identities = 76/85 (89%), Positives = 82/85 (96%)
Frame = -2
Query: 650 GSYNYDEMIGSLEGNEGFGRADYFLVGKDFPSYIECQEKVDEAYRDPKLWTRMSILNTAG 471
GSYNYDE+IGSLEGNEGFGRADYFLVG+DFPSY+ECQE+VD+AYRD K WTRMSILNTAG
Sbjct: 918 GSYNYDELIGSLEGNEGFGRADYFLVGQDFPSYLECQEEVDKAYRDQKKWTRMSILNTAG 977
Query: 470 SPKFSSDRTIHEYARDIWNIEPVKL 396
S KFSSDRTIHEYAR+IWNIEPVKL
Sbjct: 978 SSKFSSDRTIHEYAREIWNIEPVKL 1002
>pir||S47243 starch phosphorylase (EC 2.4.1.1) isoform L precursor, chloroplast -
fava bean
Length = 1000
Score = 165 bits (418), Expect = 4e-40
Identities = 76/85 (89%), Positives = 82/85 (96%)
Frame = -2
Query: 650 GSYNYDEMIGSLEGNEGFGRADYFLVGKDFPSYIECQEKVDEAYRDPKLWTRMSILNTAG 471
GSYNYDE+IGSLEGNEGFGRADYFLVG+DFPSY+ECQE+VD+AYRD K WTRMSILNTAG
Sbjct: 915 GSYNYDELIGSLEGNEGFGRADYFLVGQDFPSYLECQEEVDKAYRDQKKWTRMSILNTAG 974
Query: 470 SPKFSSDRTIHEYARDIWNIEPVKL 396
S KFSSDRTIHEYAR+IWNIEPVKL
Sbjct: 975 SSKFSSDRTIHEYAREIWNIEPVKL 999
>emb|CAA36612.1| starch phosphorylase (AA 1-966) [Solanum tuberosum]
Length = 966
Score = 161 bits (408), Expect = 6e-39
Identities = 75/85 (88%), Positives = 80/85 (93%)
Frame = -2
Query: 650 GSYNYDEMIGSLEGNEGFGRADYFLVGKDFPSYIECQEKVDEAYRDPKLWTRMSILNTAG 471
GSYNYD++IGSLEGNEGFGRADYFLVGKDFPSYIECQEKVDEAYRD K WT MSILNTAG
Sbjct: 881 GSYNYDDLIGSLEGNEGFGRADYFLVGKDFPSYIECQEKVDEAYRDQKRWTTMSILNTAG 940
Query: 470 SPKFSSDRTIHEYARDIWNIEPVKL 396
S KFSSDRTIHEYA+DIWNIE V++
Sbjct: 941 SYKFSSDRTIHEYAKDIWNIEAVEI 965
>sp|P04045|PHS1_SOLTU Alpha-1,4 glucan phosphorylase, L-1 isozyme, chloroplast precursor
(Starch phosphorylase L-1) gi|66567|pir||PHPOAG starch
phosphorylase (EC 2.4.1.1) precursor - potato
gi|217999|dbj|BAA00407.1| alpha-glucan phosphorylase
precursor [Solanum tuberosum]
Length = 966
Score = 161 bits (408), Expect = 6e-39
Identities = 75/85 (88%), Positives = 80/85 (93%)
Frame = -2
Query: 650 GSYNYDEMIGSLEGNEGFGRADYFLVGKDFPSYIECQEKVDEAYRDPKLWTRMSILNTAG 471
GSYNYD++IGSLEGNEGFGRADYFLVGKDFPSYIECQEKVDEAYRD K WT MSILNTAG
Sbjct: 881 GSYNYDDLIGSLEGNEGFGRADYFLVGKDFPSYIECQEKVDEAYRDQKRWTTMSILNTAG 940
Query: 470 SPKFSSDRTIHEYARDIWNIEPVKL 396
S KFSSDRTIHEYA+DIWNIE V++
Sbjct: 941 SYKFSSDRTIHEYAKDIWNIEAVEI 965
>sp|P27598|PHSL_IPOBA Alpha-1,4 glucan phosphorylase, L isozyme, chloroplast precursor
(Starch phosphorylase L) gi|7433825|pir||T10947 starch
phosphorylase (EC 2.4.1.1) precursor - sweet potato
gi|168276|gb|AAA63271.1| starch phosphorylase
Length = 955
Score = 161 bits (407), Expect = 8e-39
Identities = 74/86 (86%), Positives = 79/86 (91%)
Frame = -2
Query: 650 GSYNYDEMIGSLEGNEGFGRADYFLVGKDFPSYIECQEKVDEAYRDPKLWTRMSILNTAG 471
GS YDE++GSLEGNEGFGR DYFLVGKDFPSYIECQEKVDEAYRD K+WTRMSILNTAG
Sbjct: 870 GSNTYDELLGSLEGNEGFGRGDYFLVGKDFPSYIECQEKVDEAYRDQKIWTRMSILNTAG 929
Query: 470 SPKFSSDRTIHEYARDIWNIEPVKLP 393
S KFSSDRTIHEYA+DIWNI+PV P
Sbjct: 930 SYKFSSDRTIHEYAKDIWNIQPVVFP 955
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 584,868,373
Number of Sequences: 1393205
Number of extensions: 13066501
Number of successful extensions: 31319
Number of sequences better than 10.0: 196
Number of HSP's better than 10.0 without gapping: 30753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31312
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
