Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001189A_C02 KMC001189A_c02
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188494.1| hypothetical protein; protein id: At3g18640.1 [... 134 1e-30
ref|NP_566802.1| expressed protein; protein id: At3g26850.1, sup... 87 2e-16
ref|NP_671921.1| hypothetical protein; protein id: At2g33835.1 [... 84 2e-15
gb|AAO72717.1| unknown protein [Arabidopsis thaliana] 84 2e-15
gb|EAA07000.1| agCP7271 [Anopheles gambiae str. PEST] 45 9e-04
>ref|NP_188494.1| hypothetical protein; protein id: At3g18640.1 [Arabidopsis
thaliana] gi|9294325|dbj|BAB02222.1|
gene_id:K24M9.13~unknown protein [Arabidopsis thaliana]
Length = 676
Score = 134 bits (337), Expect = 1e-30
Identities = 71/127 (55%), Positives = 87/127 (67%), Gaps = 2/127 (1%)
Frame = -1
Query: 665 NEMVAEEKRSSRGENKITKESAPLESMD--QSGGPDEIKNTKDVKGMRAFKGSLVEFIKE 492
+E EE+ GE+ E+ E D G +E K KD KGMRAFK +LVE +KE
Sbjct: 549 DEASKEEEGKKTGEDTNDAENVVDEDEDGDDDGSDEENKKEKDPKGMRAFKFALVEVVKE 608
Query: 491 LLKPTWKEGQITKDDYKEIVKKVTDKVSVTVQRAHVPQTQEKIDRYLSVSKPKLNKLIQA 312
LLKP WKEG++ KD YK IVKKV +KV+ T+Q +VPQTQEKID YLS SKPKL KL+QA
Sbjct: 609 LLKPAWKEGKLNKDGYKNIVKKVAEKVTGTMQSGNVPQTQEKIDHYLSASKPKLTKLVQA 668
Query: 311 YVEKVQK 291
YV K++K
Sbjct: 669 YVGKIKK 675
>ref|NP_566802.1| expressed protein; protein id: At3g26850.1, supported by cDNA:
gi_15810130 [Arabidopsis thaliana]
gi|9279675|dbj|BAB01232.1| gene_id:MDJ14.17~unknown
protein [Arabidopsis thaliana]
gi|15810131|gb|AAL07209.1| unknown protein [Arabidopsis
thaliana]
Length = 265
Score = 87.0 bits (214), Expect = 2e-16
Identities = 38/93 (40%), Positives = 65/93 (69%)
Frame = -1
Query: 566 DEIKNTKDVKGMRAFKGSLVEFIKELLKPTWKEGQITKDDYKEIVKKVTDKVSVTVQRAH 387
++ K + M+ FK L +F+K+LLKP+W++G ++K+ +K IVK+V DKVS +++
Sbjct: 173 EKSKERDSSRSMKLFKVVLTKFVKDLLKPSWRQGNMSKEAFKTIVKRVVDKVSNSMEGRR 232
Query: 386 VPQTQEKIDRYLSVSKPKLNKLIQAYVEKVQKA 288
+P+++ KID+Y+ S+ KL KL+ YV+K KA
Sbjct: 233 IPKSRAKIDKYIDSSQQKLTKLVMGYVDKYVKA 265
>ref|NP_671921.1| hypothetical protein; protein id: At2g33835.1 [Arabidopsis
thaliana]
Length = 587
Score = 83.6 bits (205), Expect = 2e-15
Identities = 47/118 (39%), Positives = 70/118 (58%), Gaps = 1/118 (0%)
Frame = -1
Query: 641 RSSRGENKITKESAPLESMDQSGGPDEIKNTKDVKGMRAFKGSLVEFIKELLKPTWKEGQ 462
RS K TK+S ++ E+++ +K MR F+ ++VE IKE+LKP W+EG+
Sbjct: 477 RSDGSSYKKTKKSDEIDG--------EVRSDAGMKVMRLFRTAVVETIKEMLKPLWREGR 528
Query: 461 ITKDDYKEIVKKVTDK-VSVTVQRAHVPQTQEKIDRYLSVSKPKLNKLIQAYVEKVQK 291
+TKD + IVKK +K V VQ VP E +D+YL +S ++ KL++ YVEK K
Sbjct: 529 LTKDVHNMIVKKAAEKVVGAAVQFHQVPTDTESVDQYLGLSGTRIVKLVEGYVEKYGK 586
>gb|AAO72717.1| unknown protein [Arabidopsis thaliana]
Length = 381
Score = 83.6 bits (205), Expect = 2e-15
Identities = 47/118 (39%), Positives = 70/118 (58%), Gaps = 1/118 (0%)
Frame = -1
Query: 641 RSSRGENKITKESAPLESMDQSGGPDEIKNTKDVKGMRAFKGSLVEFIKELLKPTWKEGQ 462
RS K TK+S ++ E+++ +K MR F+ ++VE IKE+LKP W+EG+
Sbjct: 271 RSDGSSYKKTKKSDEIDG--------EVRSDAGMKVMRLFRTAVVETIKEMLKPLWREGR 322
Query: 461 ITKDDYKEIVKKVTDK-VSVTVQRAHVPQTQEKIDRYLSVSKPKLNKLIQAYVEKVQK 291
+TKD + IVKK +K V VQ VP E +D+YL +S ++ KL++ YVEK K
Sbjct: 323 LTKDVHNMIVKKAAEKVVGAAVQFHQVPTDTESVDQYLGLSGTRIVKLVEGYVEKYGK 380
>gb|EAA07000.1| agCP7271 [Anopheles gambiae str. PEST]
Length = 451
Score = 45.1 bits (105), Expect = 9e-04
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Frame = -1
Query: 641 RSSRGENKITKESAPLESMDQSGGPDEIKNTKDVKGMRAFKG--SLVEFIKELLKPTWKE 468
RS +G +K +K + D + D K + K ++ +VE +K ++KP + +
Sbjct: 313 RSRKGPHKRSKGGKSNQKGDTANDEDPSKLSDKEKYLKKLNRLERVVEEVKLVIKPYYNK 372
Query: 467 GQITKDDYKEIVKKVTDKVSVTVQRAHVPQTQEKIDRYLSVSKPKLNKLIQAYVEKVQ 294
QI KD+YK+I+++ K+ H R ++ K+ KLI+AYV K++
Sbjct: 373 KQINKDEYKDILRRAVPKI------CH--------SRTGEINPIKIQKLIKAYVRKIR 416
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,693,360
Number of Sequences: 1393205
Number of extensions: 11863104
Number of successful extensions: 32336
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 31216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32313
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
