Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001188A_C01 KMC001188A_c01
(830 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172512.1| unknown protein; protein id: At1g10410.1, suppo... 222 5e-57
pir||A86238 protein F14N23.31 [imported] - Arabidopsis thaliana ... 222 5e-57
ref|NP_564750.1| expressed protein; protein id: At1g59650.1, sup... 216 3e-55
gb|AAO38509.1| unknown protein [Oryza sativa (japonica cultivar-... 212 6e-54
pir||H86272 hypothetical protein F7A19.6 - Arabidopsis thaliana ... 175 6e-43
>ref|NP_172512.1| unknown protein; protein id: At1g10410.1, supported by cDNA:
gi_20453051 [Arabidopsis thaliana]
gi|20453052|gb|AAM19771.1| At1g10410/F14N23_31
[Arabidopsis thaliana]
Length = 485
Score = 222 bits (566), Expect = 5e-57
Identities = 105/130 (80%), Positives = 118/130 (90%)
Frame = -1
Query: 830 MSFVLYFKLSESYSKELPLHFQESMRRLMDDEVEKVKGFPVDSIVPFRERLKILGRVVXL 651
M+ VLYFKLS++YSKELPLHFQES+RRL+DDEVEKVKGFP+D+ PFRERLKILGRV +
Sbjct: 321 MNIVLYFKLSDNYSKELPLHFQESIRRLIDDEVEKVKGFPLDTTAPFRERLKILGRVANV 380
Query: 650 EDLHLSAAERKLMTAYNEKPVLSRPQHEFYSGENYFEIDIDMHRFSYISRKGFEAFLDRL 471
+DLHLS E+KLM AYNEKPVLSRPQHEFY G+NYFEIDIDMHRF YISRKGFE F+DRL
Sbjct: 381 DDLHLSGPEKKLMQAYNEKPVLSRPQHEFYLGDNYFEIDIDMHRFGYISRKGFETFIDRL 440
Query: 470 KVCVLDVG*T 441
K+CVLDVG T
Sbjct: 441 KICVLDVGLT 450
>pir||A86238 protein F14N23.31 [imported] - Arabidopsis thaliana
gi|4914345|gb|AAD32893.1|AC005489_31 F14N23.31
[Arabidopsis thaliana]
Length = 512
Score = 222 bits (566), Expect = 5e-57
Identities = 105/130 (80%), Positives = 118/130 (90%)
Frame = -1
Query: 830 MSFVLYFKLSESYSKELPLHFQESMRRLMDDEVEKVKGFPVDSIVPFRERLKILGRVVXL 651
M+ VLYFKLS++YSKELPLHFQES+RRL+DDEVEKVKGFP+D+ PFRERLKILGRV +
Sbjct: 348 MNIVLYFKLSDNYSKELPLHFQESIRRLIDDEVEKVKGFPLDTTAPFRERLKILGRVANV 407
Query: 650 EDLHLSAAERKLMTAYNEKPVLSRPQHEFYSGENYFEIDIDMHRFSYISRKGFEAFLDRL 471
+DLHLS E+KLM AYNEKPVLSRPQHEFY G+NYFEIDIDMHRF YISRKGFE F+DRL
Sbjct: 408 DDLHLSGPEKKLMQAYNEKPVLSRPQHEFYLGDNYFEIDIDMHRFGYISRKGFETFIDRL 467
Query: 470 KVCVLDVG*T 441
K+CVLDVG T
Sbjct: 468 KICVLDVGLT 477
>ref|NP_564750.1| expressed protein; protein id: At1g59650.1, supported by cDNA:
gi_6520232 [Arabidopsis thaliana]
gi|25369722|pir||T52427 hypothetical protein CW14
[imported] - Arabidopsis thaliana
gi|6520233|dbj|BAA87958.1| CW14 [Arabidopsis thaliana]
gi|8778748|gb|AAF79756.1|AC009317_15 T30E16.22
[Arabidopsis thaliana] gi|28393683|gb|AAO42254.1|
unknown protein [Arabidopsis thaliana]
gi|28973197|gb|AAO63923.1| unknown protein [Arabidopsis
thaliana]
Length = 492
Score = 216 bits (551), Expect = 3e-55
Identities = 105/130 (80%), Positives = 118/130 (90%)
Frame = -1
Query: 830 MSFVLYFKLSESYSKELPLHFQESMRRLMDDEVEKVKGFPVDSIVPFRERLKILGRVVXL 651
M+FVLYFKLS++Y KELP HFQES++RL+DDEVEKV+G+ D+ VPFRERLKILGRV +
Sbjct: 326 MNFVLYFKLSDNYLKELPPHFQESIQRLLDDEVEKVRGYTTDTNVPFRERLKILGRVANV 385
Query: 650 EDLHLSAAERKLMTAYNEKPVLSRPQHEFYSGENYFEIDIDMHRFSYISRKGFEAFLDRL 471
+DL L+ AE+KLM AYNEKPVLSRPQHEFYSGENYFEIDIDMHRFSYISRKGFEAFLDRL
Sbjct: 386 DDLQLNGAEKKLMNAYNEKPVLSRPQHEFYSGENYFEIDIDMHRFSYISRKGFEAFLDRL 445
Query: 470 KVCVLDVG*T 441
K CVLDVG T
Sbjct: 446 KNCVLDVGLT 455
>gb|AAO38509.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 505
Score = 212 bits (539), Expect = 6e-54
Identities = 102/130 (78%), Positives = 117/130 (89%)
Frame = -1
Query: 830 MSFVLYFKLSESYSKELPLHFQESMRRLMDDEVEKVKGFPVDSIVPFRERLKILGRVVXL 651
MSFVLYF+LS++YSKELP F E++R+L+DD VEKVK FP+++ +PFRERLKILGRV L
Sbjct: 341 MSFVLYFRLSDAYSKELPPSFIENIRKLVDDHVEKVKAFPMETTIPFRERLKILGRVANL 400
Query: 650 EDLHLSAAERKLMTAYNEKPVLSRPQHEFYSGENYFEIDIDMHRFSYISRKGFEAFLDRL 471
EDL LSAAERKLM AYNEKPVLSRPQHEFY G+NYFE+DIDMHRFSYISRKGFE FLDRL
Sbjct: 401 EDLPLSAAERKLMHAYNEKPVLSRPQHEFYLGDNYFEVDIDMHRFSYISRKGFETFLDRL 460
Query: 470 KVCVLDVG*T 441
K+C+LDVG T
Sbjct: 461 KICMLDVGLT 470
>pir||H86272 hypothetical protein F7A19.6 - Arabidopsis thaliana
gi|5080773|gb|AAD39283.1|AC007576_6 Hypothetical protein
[Arabidopsis thaliana] gi|28393763|gb|AAO42291.1|
unknown protein [Arabidopsis thaliana]
gi|28973433|gb|AAO64041.1| unknown protein [Arabidopsis
thaliana]
Length = 504
Score = 175 bits (444), Expect = 6e-43
Identities = 82/130 (63%), Positives = 107/130 (82%)
Frame = -1
Query: 830 MSFVLYFKLSESYSKELPLHFQESMRRLMDDEVEKVKGFPVDSIVPFRERLKILGRVVXL 651
+S VLYFK +E+Y KE+ HF+E+++R M+DE+EKVKGF +S VPFRERLKI+ +V
Sbjct: 337 LSLVLYFKRNENYHKEISSHFKETIKRFMEDEMEKVKGFTRESTVPFRERLKIMAGLVNP 396
Query: 650 EDLHLSAAERKLMTAYNEKPVLSRPQHEFYSGENYFEIDIDMHRFSYISRKGFEAFLDRL 471
ED LS+ ERKL+TAYN++PVLSRPQH+F+ G NYFEID+D+HRFSYISRKG E+F DR+
Sbjct: 397 EDFQLSSTERKLITAYNDRPVLSRPQHDFFQGPNYFEIDLDIHRFSYISRKGLESFRDRI 456
Query: 470 KVCVLDVG*T 441
K +LD+G T
Sbjct: 457 KNGILDLGLT 466
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 685,957,532
Number of Sequences: 1393205
Number of extensions: 14776251
Number of successful extensions: 34385
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 32931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34369
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 42922608498
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
