Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001185A_C01 KMC001185A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198117.1| PWWP domain protein; protein id: At5g27650.1 [A... 102 3e-21
ref|NP_187194.1| PWWP domain protein; protein id: At3g05430.1 [A... 92 6e-18
ref|NP_198850.1| PWWP domain protein; protein id: At5g40340.1 [A... 50 2e-05
ref|NP_189424.1| PWWP domain protein; protein id: At3g27860.1 [A... 40 0.016
ref|NP_187578.1| PWWP domain protein; protein id: At3g09670.1 [A... 39 0.036
>ref|NP_198117.1| PWWP domain protein; protein id: At5g27650.1 [Arabidopsis thaliana]
Length = 1063
Score = 102 bits (254), Expect = 3e-21
Identities = 67/164 (40%), Positives = 86/164 (51%), Gaps = 17/164 (10%)
Frame = +2
Query: 131 DDASEFNSKFPTDNPAAAVTDTADDNSSTPQPTHGAPNSPSEHGPATEPPARVSRNDDAA 310
DD E +S D+ AVT+ A S G S E +E + ++D+++
Sbjct: 37 DDDVEASSPMELDS---AVTNDARVLESERSEKDGVVGSEEEDEIKSED-VLIDKDDESS 92
Query: 311 VVEEFTVRVRSDGKDRERAERFSG-----------------SDSKSLWTEFDEYVAAERN 439
V+E DG D + +E S SD KSL +EFD+YVA+E+
Sbjct: 93 EVKE--EEEEEDGSDDQSSELGSEADEKELDLGLKEEKKGVSDYKSLLSEFDDYVASEKM 150
Query: 440 GVATRRDLEHSFEVGDWVWGKVKSHPWWXGHIFNEAFANPSVRR 571
G R L + FEVGD VWGKVKSHPWW GHIFNEAFA+PSVRR
Sbjct: 151 GSGVSRALSYGFEVGDLVWGKVKSHPWWPGHIFNEAFASPSVRR 194
Score = 32.3 bits (72), Expect = 4.4
Identities = 20/60 (33%), Positives = 27/60 (44%)
Frame = +3
Query: 51 PMAPSSLYG*GFVNFPFPSISHSQ**ATTLPNSTQNFPPTTPPPRLPIPPTTTLPPLNPL 230
P + SS FV+ F ++ H Q PP+T PP LP+PP T P P+
Sbjct: 957 PSSSSSSVPMEFVSKKFQNVVHHQ-----------QLPPSTLPPILPLPPQYTKPQQLPI 1005
>ref|NP_187194.1| PWWP domain protein; protein id: At3g05430.1 [Arabidopsis thaliana]
gi|7596768|gb|AAF64539.1| hypothetical protein
[Arabidopsis thaliana]
Length = 965
Score = 91.7 bits (226), Expect = 6e-18
Identities = 42/71 (59%), Positives = 51/71 (71%)
Frame = +2
Query: 359 ERAERFSGSDSKSLWTEFDEYVAAERNGVATRRDLEHSFEVGDWVWGKVKSHPWWXGHIF 538
++ E+ D KS +EFD+YVA E+ G + L + FEVGD VWGKVKSHPWW G IF
Sbjct: 95 KKMEKRRVPDYKSFLSEFDDYVAREKMGSRNSKALSYGFEVGDMVWGKVKSHPWWPGQIF 154
Query: 539 NEAFANPSVRR 571
NEAFA+PSVRR
Sbjct: 155 NEAFASPSVRR 165
>ref|NP_198850.1| PWWP domain protein; protein id: At5g40340.1 [Arabidopsis thaliana]
gi|10178144|dbj|BAB11589.1| gene_id:MPO12.6~unknown
protein [Arabidopsis thaliana]
Length = 1008
Score = 50.1 bits (118), Expect = 2e-05
Identities = 24/76 (31%), Positives = 38/76 (49%)
Frame = +2
Query: 329 VRVRSDGKDRERAERFSGSDSKSLWTEFDEYVAAERNGVATRRDLEHSFEVGDWVWGKVK 508
V + ++ E E G D + E +E + EH + VGD+VWGK+K
Sbjct: 88 VEEEEEEEEEEEEEEEDGEDEEEEEEEEEE-----------EEEEEHGYCVGDFVWGKIK 136
Query: 509 SHPWWXGHIFNEAFAN 556
+HPWW G I++ + A+
Sbjct: 137 NHPWWPGQIYDPSDAS 152
>ref|NP_189424.1| PWWP domain protein; protein id: At3g27860.1 [Arabidopsis thaliana]
gi|11994491|dbj|BAB02532.1|
gb|AAF23297.1~gene_id:K16N12.8~similar to unknown
protein [Arabidopsis thaliana]
Length = 652
Score = 40.4 bits (93), Expect = 0.016
Identities = 20/46 (43%), Positives = 29/46 (62%), Gaps = 5/46 (10%)
Frame = +2
Query: 434 RNGVATRRD----LEHSFEVGDWVWG-KVKSHPWWXGHIFNEAFAN 556
R+GV++ RD LE+ F VGD+VWG + S WW G I++ A+
Sbjct: 44 RSGVSSLRDNFEELENGFHVGDFVWGEEANSQQWWPGQIYDSLDAS 89
>ref|NP_187578.1| PWWP domain protein; protein id: At3g09670.1 [Arabidopsis thaliana]
gi|6682245|gb|AAF23297.1|AC016661_22 hypothetical
protein [Arabidopsis thaliana]
Length = 726
Score = 39.3 bits (90), Expect = 0.036
Identities = 13/29 (44%), Positives = 19/29 (64%)
Frame = +2
Query: 485 DWVWGKVKSHPWWXGHIFNEAFANPSVRR 571
D VW KV+SHPWW G +F+ + A ++
Sbjct: 201 DLVWAKVRSHPWWPGQVFDASAATDKAKK 229
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,329,272
Number of Sequences: 1393205
Number of extensions: 12985233
Number of successful extensions: 97774
Number of sequences better than 10.0: 523
Number of HSP's better than 10.0 without gapping: 63216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89998
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
