Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001183A_C01 KMC001183A_c01
(696 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197613.1| zwille/pinhead-like protein; protein id: At5g21... 156 2e-37
dbj|BAA88176.1| unnamed protein product [Oryza sativa (japonica ... 155 4e-37
emb|CAD66636.1| ARGONAUTE9 protein [Arabidopsis thaliana] 154 9e-37
pir||A84668 Argonaute (AGO1)-like protein [imported] - Arabidops... 149 4e-35
ref|NP_565633.1| Argonaute (AGO1)-like protein; protein id: At2g... 149 4e-35
>ref|NP_197613.1| zwille/pinhead-like protein; protein id: At5g21150.1 [Arabidopsis
thaliana] gi|29294055|gb|AAO73892.1| PAZ (Piwi Argonaut
and Zwille) family [Arabidopsis thaliana]
Length = 892
Score = 156 bits (395), Expect = 2e-37
Identities = 73/119 (61%), Positives = 94/119 (78%), Gaps = 3/119 (2%)
Frame = -2
Query: 695 KIVHPRNYDFYLCAHAGMIGTSRPVHYNVLLDEIGFSPDSLQNLIHSLSYANQRSSIATS 516
+I HPRN+DFYLCAHAGMIGT+RP HY+VL DEIGF+ D LQ L+HSLSY QRS+ A S
Sbjct: 774 QICHPRNFDFYLCAHAGMIGTTRPTHYHVLYDEIGFATDDLQELVHSLSYVYQRSTTAIS 833
Query: 515 IVAPIHYAHHAAAQMRQVLNFDNLSETSSN---LDSEGVVSIPELPRLHSNVKSTMFFC 348
+VAP+ YAH AAAQM V+ ++ LSETSS+ + + G V +P +P+LH+NV ++MFFC
Sbjct: 834 VVAPVCYAHLAAAQMGTVMKYEELSETSSSHGGITTPGAVPVPPMPQLHNNVSTSMFFC 892
>dbj|BAA88176.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 904
Score = 155 bits (393), Expect = 4e-37
Identities = 75/118 (63%), Positives = 91/118 (76%), Gaps = 3/118 (2%)
Frame = -2
Query: 692 IVHPRNYDFYLCAHAGMIGTSRPVHYNVLLDEIGFSPDSLQNLIHSLSYANQRSSIATSI 513
+ HPRN DFY+CAHAGMIGT+RP HY++L DEIGFS D LQ L+HSLSY QRS+ A S+
Sbjct: 787 VCHPRNNDFYMCAHAGMIGTTRPTHYHILHDEIGFSADDLQELVHSLSYVYQRSTTAISV 846
Query: 512 VAPIHYAHHAAAQMRQVLNFDNLSETSSN---LDSEGVVSIPELPRLHSNVKSTMFFC 348
VAPI YAH AAAQ+ Q + FD +SETSS+ S G +PELPRLH+ V+S+MFFC
Sbjct: 847 VAPICYAHLAAAQVSQFIKFDEMSETSSSHGGHTSAGSAPVPELPRLHNKVRSSMFFC 904
>emb|CAD66636.1| ARGONAUTE9 protein [Arabidopsis thaliana]
Length = 896
Score = 154 bits (390), Expect = 9e-37
Identities = 72/119 (60%), Positives = 94/119 (78%), Gaps = 3/119 (2%)
Frame = -2
Query: 695 KIVHPRNYDFYLCAHAGMIGTSRPVHYNVLLDEIGFSPDSLQNLIHSLSYANQRSSIATS 516
+I HPRN+DFYLCAHAGMIGT+RP HY+VL DEIGF+ D LQ L+HSLS+ QRS+ A S
Sbjct: 778 QICHPRNFDFYLCAHAGMIGTTRPTHYHVLYDEIGFATDDLQELVHSLSHVYQRSTTAIS 837
Query: 515 IVAPIHYAHHAAAQMRQVLNFDNLSETSSN---LDSEGVVSIPELPRLHSNVKSTMFFC 348
+VAP+ YAH AAAQM V+ ++ LSETSS+ + + G V +P +P+LH+NV ++MFFC
Sbjct: 838 VVAPVCYAHLAAAQMGTVMKYEELSETSSSHGGITTPGTVPVPPMPQLHNNVSTSMFFC 896
>pir||A84668 Argonaute (AGO1)-like protein [imported] - Arabidopsis thaliana
Length = 930
Score = 149 bits (376), Expect = 4e-35
Identities = 73/119 (61%), Positives = 91/119 (76%), Gaps = 3/119 (2%)
Frame = -2
Query: 695 KIVHPRNYDFYLCAHAGMIGTSRPVHYNVLLDEIGFSPDSLQNLIHSLSYANQRSSIATS 516
KI HP+N DFYLCAHAGMIGT+RP HY+VL DEIGFS D LQ L+HSLSY QRS+ A S
Sbjct: 812 KICHPKNNDFYLCAHAGMIGTTRPTHYHVLYDEIGFSADELQELVHSLSYVYQRSTSAIS 871
Query: 515 IVAPIHYAHHAAAQMRQVLNFDNLSETSSN---LDSEGVVSIPELPRLHSNVKSTMFFC 348
+VAPI YAH AAAQ+ + F++ SETSS+ + + G +S+ +LPRL NV ++MFFC
Sbjct: 872 VVAPICYAHLAAAQLGTFMKFEDQSETSSSHGGITAPGPISVAQLPRLKDNVANSMFFC 930
>ref|NP_565633.1| Argonaute (AGO1)-like protein; protein id: At2g27040.1, supported by
cDNA: gi_14334815, supported by cDNA: gi_15293198
[Arabidopsis thaliana] gi|14334816|gb|AAK59586.1|
putative Argonaute (AGO1) protein [Arabidopsis thaliana]
gi|15293199|gb|AAK93710.1| putative argonaute AGO1
protein [Arabidopsis thaliana] gi|20197419|gb|AAC77862.2|
Argonaute (AGO1)-like protein [Arabidopsis thaliana]
Length = 924
Score = 149 bits (376), Expect = 4e-35
Identities = 73/119 (61%), Positives = 91/119 (76%), Gaps = 3/119 (2%)
Frame = -2
Query: 695 KIVHPRNYDFYLCAHAGMIGTSRPVHYNVLLDEIGFSPDSLQNLIHSLSYANQRSSIATS 516
KI HP+N DFYLCAHAGMIGT+RP HY+VL DEIGFS D LQ L+HSLSY QRS+ A S
Sbjct: 806 KICHPKNNDFYLCAHAGMIGTTRPTHYHVLYDEIGFSADELQELVHSLSYVYQRSTSAIS 865
Query: 515 IVAPIHYAHHAAAQMRQVLNFDNLSETSSN---LDSEGVVSIPELPRLHSNVKSTMFFC 348
+VAPI YAH AAAQ+ + F++ SETSS+ + + G +S+ +LPRL NV ++MFFC
Sbjct: 866 VVAPICYAHLAAAQLGTFMKFEDQSETSSSHGGITAPGPISVAQLPRLKDNVANSMFFC 924
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 569,943,057
Number of Sequences: 1393205
Number of extensions: 11983358
Number of successful extensions: 29711
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 28964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29686
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
