Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001182A_C01 KMC001182A_c01
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200359.1| putative protein; protein id: At5g55480.1 [Arab... 88 1e-16
pir||T04792 hypothetical protein F10M23.30 - Arabidopsis thalian... 84 2e-15
ref|NP_567755.1| putative protein; protein id: At4g26690.1, supp... 84 2e-15
gb|AAL07129.1| unknown protein [Arabidopsis thaliana] 84 2e-15
ref|NP_176869.1| unknown protein; protein id: At1g66970.1 [Arabi... 78 1e-13
>ref|NP_200359.1| putative protein; protein id: At5g55480.1 [Arabidopsis thaliana]
gi|9758180|dbj|BAB08565.1|
gene_id:MTE17.19~pir||T04792~similar to unknown protein
[Arabidopsis thaliana]
Length = 766
Score = 87.8 bits (216), Expect = 1e-16
Identities = 49/98 (50%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
Frame = -2
Query: 628 CLNFKNIPSYMEPVSPGDLLTIITTDSLPPAQAPLPPLTESEVTEAPLPPVVAKIAPASS 449
CL K++P YM PV P LLTI++ SLPPA+AP P T+++VTE PLPPV A+ AP ++
Sbjct: 672 CLTRKDVPPYMIPVQPAGLLTIVSPASLPPAEAPSPVFTDADVTEPPLPPVSAR-APTTT 730
Query: 448 PG---AGTKLPPGNAQPKVTVCFFFSSLAVFVASLLLL 344
PG G K P N Q +V + S+ A ASLLLL
Sbjct: 731 PGPQSTGEKSP--NGQTRVALSLLLSAFATVFASLLLL 766
>pir||T04792 hypothetical protein F10M23.30 - Arabidopsis thaliana
gi|4455192|emb|CAB36515.1| putative protein [Arabidopsis
thaliana] gi|7269521|emb|CAB79524.1| putative protein
[Arabidopsis thaliana]
Length = 770
Score = 83.6 bits (205), Expect = 2e-15
Identities = 45/96 (46%), Positives = 59/96 (60%), Gaps = 1/96 (1%)
Frame = -2
Query: 628 CLNFKNIPSYMEPVSPGDLLTIITTDSLPPAQAPLPPLTESEVTEAPLPPVVAKIAPASS 449
CL K YM P PG LLT+++ + PPA+AP P T+++VTE PLPPV AK AP SS
Sbjct: 676 CLGRKETIPYMAPAQPGALLTLVSPTAFPPAEAPNPVFTDADVTEPPLPPVTAK-APTSS 734
Query: 448 PGA-GTKLPPGNAQPKVTVCFFFSSLAVFVASLLLL 344
PG T + Q ++T+ S A+ +ASLLLL
Sbjct: 735 PGTPSTNAQAPSGQTRITLSLLLSVFAMVLASLLLL 770
>ref|NP_567755.1| putative protein; protein id: At4g26690.1, supported by cDNA:
gi_15810482 [Arabidopsis thaliana]
Length = 759
Score = 83.6 bits (205), Expect = 2e-15
Identities = 45/96 (46%), Positives = 59/96 (60%), Gaps = 1/96 (1%)
Frame = -2
Query: 628 CLNFKNIPSYMEPVSPGDLLTIITTDSLPPAQAPLPPLTESEVTEAPLPPVVAKIAPASS 449
CL K YM P PG LLT+++ + PPA+AP P T+++VTE PLPPV AK AP SS
Sbjct: 665 CLGRKETIPYMAPAQPGALLTLVSPTAFPPAEAPNPVFTDADVTEPPLPPVTAK-APTSS 723
Query: 448 PGA-GTKLPPGNAQPKVTVCFFFSSLAVFVASLLLL 344
PG T + Q ++T+ S A+ +ASLLLL
Sbjct: 724 PGTPSTNAQAPSGQTRITLSLLLSVFAMVLASLLLL 759
>gb|AAL07129.1| unknown protein [Arabidopsis thaliana]
Length = 759
Score = 83.6 bits (205), Expect = 2e-15
Identities = 45/96 (46%), Positives = 59/96 (60%), Gaps = 1/96 (1%)
Frame = -2
Query: 628 CLNFKNIPSYMEPVSPGDLLTIITTDSLPPAQAPLPPLTESEVTEAPLPPVVAKIAPASS 449
CL K YM P PG LLT+++ + PPA+AP P T+++VTE PLPPV AK AP SS
Sbjct: 665 CLGRKETIPYMAPAQPGALLTLVSPTAFPPAEAPNPVFTDADVTEPPLPPVTAK-APTSS 723
Query: 448 PGA-GTKLPPGNAQPKVTVCFFFSSLAVFVASLLLL 344
PG T + Q ++T+ S A+ +ASLLLL
Sbjct: 724 PGTPSTNAQAPSGQTRITLSLLLSVFAMVLASLLLL 759
>ref|NP_176869.1| unknown protein; protein id: At1g66970.1 [Arabidopsis thaliana]
Length = 747
Score = 77.8 bits (190), Expect = 1e-13
Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 3/99 (3%)
Frame = -2
Query: 631 KCLNFKNIPSYMEPVSPGDLLTIITTDSLPPAQAPLPPLTESEVTEAPLPPVVAKIAPAS 452
+CL + +P YM PV+PG LL +++ SLPPAQAP E++VTE PL PV+AK AP S
Sbjct: 655 RCLGREEVPPYMLPVNPGGLLNVMSPLSLPPAQAPNQDFIEADVTEPPLSPVIAK-APTS 713
Query: 451 SPGAGTKL---PPGNAQPKVTVCFFFSSLAVFVASLLLL 344
+PG + + P G + K+++ L+VF SLLLL
Sbjct: 714 TPGTPSTIAQAPSGQTRLKLSLL-----LSVFFLSLLLL 747
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,538,039
Number of Sequences: 1393205
Number of extensions: 12098919
Number of successful extensions: 56852
Number of sequences better than 10.0: 277
Number of HSP's better than 10.0 without gapping: 45919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54953
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
