Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001181A_C01 KMC001181A_c01
(455 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187567.1| unknown protein; protein id: At3g09560.1 [Arabi... 93 1e-18
ref|NP_199101.1| putative protein; protein id: At5g42870.1 [Arab... 78 4e-14
gb|AAO50887.1| hypothetical protein [Dictyostelium discoideum] 55 3e-07
ref|XP_237521.1| similar to lipin 2 [Mus musculus] [Rattus norve... 50 8e-06
dbj|BAC34088.1| unnamed protein product [Mus musculus] 50 1e-05
>ref|NP_187567.1| unknown protein; protein id: At3g09560.1 [Arabidopsis thaliana]
gi|6682235|gb|AAF23287.1|AC016661_12 unknown protein
[Arabidopsis thaliana]
Length = 904
Score = 93.2 bits (230), Expect = 1e-18
Identities = 44/66 (66%), Positives = 55/66 (82%), Gaps = 2/66 (3%)
Frame = -1
Query: 455 KIGIPEAKIFIINPKGEVPTSH-CNYPKSYTSLHTLVNDMFPAT-LIEKEDFNPRNYWRL 282
K+GIP+ KIFIINPKGEV T H + KSYTSLHTLVNDMFP T L+E+ED+NP N+W+L
Sbjct: 839 KLGIPKGKIFIINPKGEVATGHRIDVKKSYTSLHTLVNDMFPPTSLVEQEDYNPWNFWKL 898
Query: 281 PLPDVD 264
P+ +V+
Sbjct: 899 PIEEVE 904
>ref|NP_199101.1| putative protein; protein id: At5g42870.1 [Arabidopsis thaliana]
gi|9758575|dbj|BAB09188.1|
gb|AAF23287.1~gene_id:MBD2.6~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 930
Score = 78.2 bits (191), Expect = 4e-14
Identities = 39/64 (60%), Positives = 46/64 (70%), Gaps = 1/64 (1%)
Frame = -1
Query: 455 KIGIPEAKIFIINPKGEVPTSHCNYPKSYTSLHTLVNDMFPAT-LIEKEDFNPRNYWRLP 279
K+GIP KIFIINPKGEV + +SYT+LHTLVN MFPAT E EDFN N+W+LP
Sbjct: 866 KVGIPRGKIFIINPKGEVAVNRRIDTRSYTNLHTLVNRMFPATSSSEPEDFNTWNFWKLP 925
Query: 278 LPDV 267
P +
Sbjct: 926 PPSL 929
>gb|AAO50887.1| hypothetical protein [Dictyostelium discoideum]
Length = 1325
Score = 55.1 bits (131), Expect = 3e-07
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Frame = -1
Query: 452 IGIPEAKIFIINPKGEVPTSHCNYPKSYTSLHTLVNDMFPATLIEK----EDFNPRNYWR 285
+G+P+ K F INP G + T++ Y K+YT L+ LV DMFP K E +N +YW+
Sbjct: 1254 VGVPKGKTFTINPLGVINTTNTTYNKTYTKLNDLVQDMFPCQNSNKNSVDEQWNEYHYWK 1313
Query: 284 ---LPLPDVD 264
+PL +D
Sbjct: 1314 KSVIPLHKLD 1323
>ref|XP_237521.1| similar to lipin 2 [Mus musculus] [Rattus norvegicus]
Length = 484
Score = 50.4 bits (119), Expect = 8e-06
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Frame = -1
Query: 455 KIGIPEAKIFIINPKGEVPTSHCNYPK-SYTSLHTLVNDMFPATLIEKE--------DFN 303
++G+P+ +IF +NPKGE+ K SY L LV +FP L+ KE +F+
Sbjct: 409 QVGVPDCRIFTVNPKGELIQERTKGNKSSYHRLSELVEHVFP--LLNKEQNSAFPCPEFS 466
Query: 302 PRNYWRLPLPDVDDD 258
YWR P+PDVD D
Sbjct: 467 SFCYWRDPIPDVDLD 481
>dbj|BAC34088.1| unnamed protein product [Mus musculus]
Length = 235
Score = 49.7 bits (117), Expect = 1e-05
Identities = 29/75 (38%), Positives = 42/75 (55%), Gaps = 9/75 (12%)
Frame = -1
Query: 455 KIGIPEAKIFIINPKGE-VPTSHCNYPKSYTSLHTLVNDMFPATLIEKE--------DFN 303
++G+P+ +IF +NPKGE + S SY L LV +FP L+ KE +F+
Sbjct: 160 QVGVPDCRIFTVNPKGELIQESTKGNKSSYHRLSELVEHVFP--LLSKEQNSAFPCPEFS 217
Query: 302 PRNYWRLPLPDVDDD 258
YWR P+PD+D D
Sbjct: 218 SFCYWRDPIPDLDLD 232
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,186,911
Number of Sequences: 1393205
Number of extensions: 8086418
Number of successful extensions: 16791
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 16490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16775
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
