Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001180A_C01 KMC001180A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193444.1| hypothetical protein; protein id: At4g17110.1 [... 44 0.002
gb|AAG60185.1|AC084763_5 unknown protein [Oryza sativa] 35 0.57
ref|XP_146146.1| similar to olfactory receptor MOR253-4 [Mus mus... 33 2.8
ref|XP_146148.1| olfactory receptor 45 [Mus musculus] gi|2220381... 32 4.8
gb|AAD13311.1| olfactory receptor B6 [Mus musculus] 32 4.8
>ref|NP_193444.1| hypothetical protein; protein id: At4g17110.1 [Arabidopsis
thaliana] gi|7485183|pir||G71439 hypothetical protein -
Arabidopsis thaliana gi|2245069|emb|CAB10492.1|
hypothetical protein [Arabidopsis thaliana]
gi|7268462|emb|CAB80982.1| hypothetical protein
[Arabidopsis thaliana]
Length = 335
Score = 43.5 bits (101), Expect = 0.002
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = -1
Query: 603 MYQVQSDALHFVALRQSKEESEMIMKPKRVRDD 505
+YQV+SDALHF+ALRQ+KE+S+ K RVRDD
Sbjct: 290 IYQVRSDALHFMALRQTKEDSD--WKAIRVRDD 320
>gb|AAG60185.1|AC084763_5 unknown protein [Oryza sativa]
Length = 660
Score = 35.4 bits (80), Expect = 0.57
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = -1
Query: 603 MYQVQSDALHFVALRQSKEESEMIMKPKRVRD 508
+YQVQS +L F+A+R+ KEE E +KPK+V +
Sbjct: 621 VYQVQSKSLQFMAMRRPKEECE--LKPKKVSE 650
>ref|XP_146146.1| similar to olfactory receptor MOR253-4 [Mus musculus]
gi|22129001|ref|NP_667172.1| olfactory receptor MOR253-4
[Mus musculus] gi|18479552|gb|AAL60790.1| olfactory
receptor MOR253-4 [Mus musculus]
Length = 319
Score = 33.1 bits (74), Expect = 2.8
Identities = 17/81 (20%), Positives = 43/81 (52%)
Frame = -3
Query: 463 MITSCKIVFIS*LLLLTSHGDGTWLGIMYIFSLIQWYMSAMLLCVVLAVQRLKRGTCWQF 284
++ SC +++ +L L + D ++GI ++ +L+ + C++ ++ R++ +
Sbjct: 194 LLLSCSPTYVNSILTLVA--DAFFVGINFMLTLLSYG------CIIASILRMRSAEGKRK 245
Query: 283 RTHTCNLHLLLHSLCLEPLFC 221
TC+ HL++ S+ +FC
Sbjct: 246 AFSTCSSHLIVVSVYYSSMFC 266
>ref|XP_146148.1| olfactory receptor 45 [Mus musculus] gi|22203817|ref|NP_667174.1|
olfactory receptor 45; olfactory receptor MOR253-2 [Mus
musculus] gi|18479548|gb|AAL60788.1| olfactory receptor
MOR253-2 [Mus musculus]
Length = 311
Score = 32.3 bits (72), Expect = 4.8
Identities = 16/81 (19%), Positives = 42/81 (51%)
Frame = -3
Query: 463 MITSCKIVFIS*LLLLTSHGDGTWLGIMYIFSLIQWYMSAMLLCVVLAVQRLKRGTCWQF 284
++ SC +++ ++T GD + G+ ++ +L+ + C++ ++ R++ +
Sbjct: 186 LLLSCSPTYVN--TIMTLLGDSFFGGVNFVLTLLSYG------CIIASILRMRSAEGKRK 237
Query: 283 RTHTCNLHLLLHSLCLEPLFC 221
TC+ HL++ S+ +FC
Sbjct: 238 AFSTCSSHLIVVSVYYSSVFC 258
>gb|AAD13311.1| olfactory receptor B6 [Mus musculus]
Length = 223
Score = 32.3 bits (72), Expect = 4.8
Identities = 16/81 (19%), Positives = 42/81 (51%)
Frame = -3
Query: 463 MITSCKIVFIS*LLLLTSHGDGTWLGIMYIFSLIQWYMSAMLLCVVLAVQRLKRGTCWQF 284
++ SC +++ ++T GD + G+ ++ +L+ + C++ ++ R++ +
Sbjct: 122 LLLSCSPTYVN--TIMTLLGDSFFGGVNFVLTLLSYG------CIIASILRMRSAEGKRK 173
Query: 283 RTHTCNLHLLLHSLCLEPLFC 221
TC+ HL++ S+ +FC
Sbjct: 174 AFSTCSSHLIVVSVYYSSVFC 194
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,039,597
Number of Sequences: 1393205
Number of extensions: 11172282
Number of successful extensions: 23269
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23256
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
